PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_021286

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 259aa MW: 28711.5 Da PI: 7.4734

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_021286	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	65	112	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+h+++ErrRR+riN +++Lr ++P K++Ka+ L ++++++k+L+ DCAR_021286 65 RNHSQAERRRRERINGHLATLRNIIPGT-----AKMDKASLLAEVIDHLKQLR 112 58***********************6.....5***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.828	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.96E-11	65	113	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.2E-14	65	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-11	65	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.07E-14	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	68	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MELSHSLDAF LENYEHKGIV SGGGGSSLVL DSERGEIVRA VSSNLNKPVV QKGCLNPEKA 60 MVALRNHSQA ERRRRERING HLATLRNIIP GTAKMDKASL LAEVIDHLKQ LRRNAADVTK 120 GILVPMDIDE VRVEQQYDSS GGDSCSIRAS ICCEYKHEVL SDLRQALEEF QLKTVKAEIA 180 TLGSRMTNLF EISCCKQENI QDTEGCQLFA NSVRQALRSV LDKFHASEEF TTNSALSNKR 240 RRVSLFNSSN ESSLGSFW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	70	75	ERRRRE
2	238	242	KRRRV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254275.1	0.0	PREDICTED: transcription factor bHLH30-like
TrEMBL	A0A161YEQ6	0.0	A0A161YEQ6_DAUCS; Uncharacterized protein
STRING	XP_009611307.1	1e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11989	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_021286