PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020907
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 392aa    MW: 44310.1 Da    PI: 6.2897
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020907genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-073413732254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  DCAR_020907 341 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 373
                  59*****************************87 PP
2ELK28.92.5e-10294315122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  DCAR_020907 294 ELKHELKQGYKEKIVDIREEIL 315
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.6E-18127171IPR005540KNOX1
PfamPF037901.0E-16130170IPR005540KNOX1
SMARTSM012561.1E-22181237IPR005541KNOX2
PfamPF037914.7E-17187236IPR005541KNOX2
PROSITE profilePS512139.969294314IPR005539ELK domain
PfamPF037898.9E-7294315IPR005539ELK domain
SMARTSM011886.1E-4294315IPR005539ELK domain
PROSITE profilePS5007111.677314377IPR001356Homeobox domain
SuperFamilySSF466895.56E-16316380IPR009057Homeodomain-like
SMARTSM003897.6E-11316381IPR001356Homeobox domain
CDDcd000863.97E-11317378No hitNo description
Gene3DG3DSA:1.10.10.604.9E-25321378IPR009057Homeodomain-like
PfamPF059201.1E-17334373IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MAFHQDHISQ AMALHHYSDQ QLTDNASLFH LSGQSSPPSE VNGKPPTWLN NAILRQQSHN  60
YAAAEGNFLH LQTTNSDSSA SNQWLSRSLN DDVAPSGETM IPMSNQEKKY ESNDNCNSSE  120
EKNWQNAKSK ADILAHPLYD QLLSAHVSCL RIATPVDQLP RIDAQLEQSH QVVAKYSILQ  180
HNNTHPLDAK DLDQFMTHYV LLLSSFKDQL QQHVRVHAME AVMACWELEQ SLQSLTGVAP  240
GEGTGATMSD DDDDHDDSET NLFDGGLDGP DSMGFGPLVP TESERSLMER VRQELKHELK  300
QGYKEKIVDI REEILRKRRA GKLPGDTTSL LKAWWQSHSK WPYPTEEDKA RLVQETGLQL  360
KQINNWFINQ RKRNWHSNPS SSTVSKSKRK R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370390RKRNWHSNPSSSTVSKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017215037.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X2
SwissprotO223001e-174LET12_SOLLC; Homeobox protein knotted-1-like LET12
SwissprotP480001e-174KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A164WFW00.0A0A164WFW0_DAUCS; Uncharacterized protein
STRINGVIT_11s0118g00800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-164KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]