PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_020568

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 245aa MW: 27720.4 Da PI: 8.4375

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020568	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47	4.6e-15	66	118	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn++Er RR+++Ns ++ Lr+llP ++kKls ++ ++ +YI +Lq DCAR_020568 66 KKINHNANERDRRKKMNSLYSSLRSLLPAsH---QAKKLSIPNTVSRVLKYIPELQ 118 6789***********************55...9****************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.916	65	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.86E-5	66	122	No hit	No description
SuperFamily	SSF47459	1.01E-14	66	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.1E-12	66	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-12	67	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-9	71	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MLSLSPSLFQ TFGWPIEDPV INHDYNNFYA DAEIQNSILH FPSTLDAQPQ VANGDSSAFE 60 PTAVVKKINH NANERDRRKK MNSLYSSLRS LLPASHQAKK LSIPNTVSRV LKYIPELQNE 120 IERLARKKEA LSAKILKQGE LFQYENQRNK SIRGSLSTVS ASLIGDKQVT IQISTLNADM 180 RLQSEALEFV EKDGFELVNA SFSSFGERAF YNLHLQVQRP LQVTEIESLR VKLSTLCHKW 240 EDQV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257481.1	0.0	PREDICTED: transcription factor ORG2-like
TrEMBL	A0A161WU02	1e-180	A0A161WU02_DAUCS; Uncharacterized protein
STRING	VIT_13s0047g00450.t01	2e-70	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	3e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_020568