PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 733aa MW: 80257.3 Da PI: 5.4968 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.2 | 2.4e-07 | 311 | 331 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg DCAR_020476 311 PCPDFRK-GACRRGDMCEYAHG 331 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00204 | 1.32E-14 | 45 | 166 | No hit | No description |
SuperFamily | SSF48403 | 1.71E-17 | 46 | 168 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.8E-17 | 71 | 168 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 4.1E-10 | 84 | 156 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.038 | 88 | 118 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50297 | 18.669 | 88 | 190 | IPR020683 | Ankyrin repeat-containing domain |
PRINTS | PR01415 | 2.1E-5 | 89 | 104 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.823 | 123 | 158 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 5.4E-5 | 123 | 155 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 2.1E-5 | 142 | 156 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 306 | 332 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 310 | 333 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 311 | 333 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-5 | 311 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 40 | 341 | 364 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MGCASERVKE ILPPISLSPS QTDSTQLPDI DMNGLNVETE DTFVTLLEMA ANNDVEGFKR 60 WIQRDPSAID EVGLWYGRQK GSKQMVLEDR TPLMVAATYG SVDVLSLILS LSEADVNQSC 120 GLDKTTALHC AASSGSLKSI DVVKLLLSAG ADPNLIDANG YRPADVILVS PKFQDMKLVL 180 GELLVNNGPD GINDLRVSCA TSNSNPSLLS PSSPENRSPS SASNSTSSPK ITNFDDLNST 240 FAAEKKEYPV DPSLPDIKNG IYSTDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR 300 DPRKYHYSCV PCPDFRKGAC RRGDMCEYAH GVFECWLHPA QYRTRLCKDG ISCNRRVCFF 360 AHKHEELRPL YVSTGSAVPS PHSNTTAASG MDFAAAMSLL PSSPSSVCAM SSSPFTPPMS 420 PSANGLQNLG WHQANVPTLQ LPGSNLQSSR LRSSLNARDI HAEDMNLLQD FDMQQQQLLH 480 EFSRLSQPNV SANSLNRSVR SRNLTPSNLD DIFSSESLSP RYSDPPLASS VFSPRQNSSI 540 LNQFHQQQSM LSPINTNFSP NKVDNPLQNS YATPLGRMSP RNMEPISPLS SRVSTFAQRE 600 QQQFRSLSSR ELGSSSSFSV GSPGDSWPKW GSSNGNAEWN VNNKDFGQLK RSATLEANTN 660 EEEPDLSWVQ SLVKESHHEA NQDSVSHVPG AAGIADASFS NSSNLNSGIE PTEQSVLGAW 720 IEQMQLDQML AQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017258760.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A161YGH2 | 0.0 | A0A161YGH2_DAUCS; Uncharacterized protein | ||||
STRING | XP_002526718.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020476 |
Publications ? help Back to Top | |||
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