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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_020343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Dof | ||||||||
Protein Properties | Length: 333aa MW: 35775 Da PI: 7.9602 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.2 | 3.6e-38 | 52 | 113 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 k +a++cprC+st+tkfCyynnyslsqPryfCk+CrryWt+GG+lr vPvGgg+rknk+sss DCAR_020343 52 KPQAINCPRCNSTHTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRSVPVGGGSRKNKRSSS 113 67899*****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-26 | 47 | 104 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.2E-32 | 54 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.565 | 56 | 110 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 58 | 94 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MDTAQWPQGT GLVQLPMEGN SNSGAAVVDH QRNNDSTNIS NKAISASARP QKPQAINCPR 60 CNSTHTKFCY YNNYSLSQPR YFCKTCRRYW TEGGSLRSVP VGGGSRKNKR SSSSSSSLVS 120 KKLPAGHETI SSHQNPNIKI YHEGSSQDLN LAYPPITNPS YTLGMPHEFA EYPNSTLASQ 180 NNFSQFLKSG ISGGRGFSSF MSMIPVSDSN GTGLLYSAST SGSSPGLPFQ EFSKTSPGLN 240 FSLNQHQGFE DSGNRGGYGS TLQGVHQENS SNTSHPKLFN FPFEDLKQTD VVPTTSTAHD 300 ELNRHDEGGD DHLQSSGLIW SNGGLGGSGA SW* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017254571.1 | 0.0 | PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 | ||||
TrEMBL | A0A161ZW02 | 0.0 | A0A161ZW02_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 2e-35 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_020343 |