PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020069
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 428aa    MW: 46800.1 Da    PI: 7.4456
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020069genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-10277325355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  DCAR_020069 277 NSHSLAERVRRERISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 325
                  58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.54E-11272329No hitNo description
SuperFamilySSF474596.54E-17272342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-16274342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7277325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10280330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MGTEDHGDMR FHHRDGDGLL NVSSSVMSTN PLSDKVAGKA MGSASMFKAI NGPDPFGSGW  60
DPLVSLNQSE NFGGHSSYSS RGYSVDNQAI GSSSHLVHYQ SDSGLGEMVP KLSGFGSGSF  120
SEMVNSYGIP DCGQMSYSLN KGGMEKALLT GTHSRKDCQI PDDKTSPDRK XXXXXXXXXX  180
XXXXXXXXXX XXXXRKNKRK AADTDSLLHA NKNDSEQQDP SAISLEEDGR KQKTEQNITS  240
NSRGKQSGKQ AKENSDSGDA AKDSYIHVRA KRGQATNSHS LAERVRRERI SERMRLLQEL  300
VPGCNKITGK AVMLDEIINY VQSLQQQVEF LSMKLATVNP EVNIDIERIL SKDLLNSRSS  360
SAAILGYQGL RPTHPFPLGN IPGIPNTTPS YHSMPQAVWD NELHNLLQMG FDANNNLGPT  420
GRPKLDL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257867.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A164X1G90.0A0A164X1G9_DAUCS; Uncharacterized protein
STRINGXP_004290997.11e-145(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52502435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-62bHLH family protein