PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_019970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 618aa MW: 67911.7 Da PI: 7.7553 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.7 | 6e-11 | 4 | 26 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + e Cr+f+r G C+yGdrCkF H DCAR_019970 4 RKEACRNFQR-GSCQYGDRCKFLH 26 6899******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 16.737 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-6 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-8 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-7 | 6 | 28 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF15704 | 4.0E-70 | 413 | 596 | IPR031432 | MALE GAMETOPHYTE DEFECTIVE 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0005753 | Cellular Component | mitochondrial proton-transporting ATP synthase complex | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0005507 | Molecular Function | copper ion binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0050897 | Molecular Function | cobalt ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MPPRKEACRN FQRGSCQYGD RCKFLHTTQQ QPKPNNAFGF GSQNASQFPR NNAQPQQPNP 60 FGFGVQNSSQ ARGANDFGSK QNQFKPFENK WSRSSSTTAA ASNAPQKSAN QPPAPEHKCT 120 DPESCKRQMK EDFEKEKPLW NLTCYGHVKN GPCDILGDIS YEELRALAYE DAKSGLSLQS 180 IVDKERNLLK AKLLEFDGLL RNSNTFPPRS TLDTNNQFPG PSPNVFPPAA QNSNPPAFSS 240 FSQLRMTPSA PVNAMAQTNP FQLNAPPSSV PGTVNITSES KGIFGSQFPT QPLGGSFPTV 300 AANISATGTV PERNTFPTSG IMPPVTNLAN SQSSIFSNGM NAASFAMTGS NASQSLMVEM 360 PKGNGGGDNS IWLKEEWFPG EVYTGPAILQ SEYAASVRLF ATAPPATKAT EGGARPPSKG 420 DELLKNIFLD VKNKFEKAMG VLRREKITID PEDQSAVAQY ANVMKTVREE AKLFSESQRI 480 EYTIASRTAG IEDARSHMLA LKEIRIKRGL TDELGAEAMM MDAVDKIEKQ LKKPLMKADK 540 EGMAMLLAEF EKINKKLGIS HEQLPKYEEE LELKIAKAQL EELKKDALEA METQAKREEF 600 KDEEMPEVKS LDIRNFL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017255666.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 | ||||
TrEMBL | A0A164X3R7 | 0.0 | A0A164X3R7_DAUCS; Uncharacterized protein | ||||
STRING | VIT_09s0070g00470.t01 | 1e-110 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.2 | 7e-66 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_019970 |