PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019902
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 808aa    MW: 87136.1 Da    PI: 8.566
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019902genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.3e-10159183226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++ t tCk+G++CkF H+
  DCAR_019902 159 GEKDCAHYMLTRTCKFGESCKFDHP 183
                  7889********************9 PP
2zf-CCCH29.41.4e-09210236127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++ C++f +t  Ck+G+rCk++H++
  DCAR_019902 210 PGEPDCPYFIKTQKCKFGPRCKYNHPK 236
                  5789*********************96 PP
3zf-CCCH33.95.4e-11259283327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C f+ +tG Ck+G++CkF+H++
  DCAR_019902 259 EPPCAFYTKTGNCKFGASCKFHHPK 283
                  79*********************96 PP
4zf-CCCH37.83.3e-12329354126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+f+++tG CkyG++C+++H+
  DCAR_019902 329 PGEVDCPFYLKTGSCKYGATCRYNHP 354
                  57899********************9 PP
5zf-CCCH38.81.6e-12413436326
                  S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + +C+f++++G+Ck+G+rCkF+H+
  DCAR_019902 413 QIECDFYMKSGECKFGERCKFHHP 436
                  568********************8 PP
6zf-CCCH37.83.3e-12470491627
                  -SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                  C+++++tG CkyG++CkF H+p
  DCAR_019902 470 CPYYMKTGACKYGATCKFDHPP 491
                  ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313157185IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017157184IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8159183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812209237IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4209236IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6211236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-5214238IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4215236IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.089256284IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6256283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5259284IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8259283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4261282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.037328356IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7328355IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-10330354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5332354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4334353IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6410437IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328410438IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-6412439IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-10414436IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-4416435IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338464492IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-6464491IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5468491IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9470491IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5470489IPR000571Zinc finger, CCCH-type
SuperFamilySSF813383.92E-24526653IPR023271Aquaporin-like
Gene3DG3DSA:1.20.1080.104.3E-26528614IPR023271Aquaporin-like
PRINTSPR007835.4E-10529548IPR000425Major intrinsic protein
PfamPF002307.1E-13658791IPR000425Major intrinsic protein
Gene3DG3DSA:1.20.1080.104.3E-26661801IPR023271Aquaporin-like
SuperFamilySSF813383.92E-24691800IPR023271Aquaporin-like
PRINTSPR007835.4E-10705723IPR000425Major intrinsic protein
PRINTSPR007835.4E-10736758IPR000425Major intrinsic protein
PRINTSPR007835.4E-10776796IPR000425Major intrinsic protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003723Molecular FunctionRNA binding
GO:0005215Molecular Functiontransporter activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MANHLFGGYN SGNYGGAGSN LSSLYSSAAD QYHPGDSASL LGATTARYLP SDPYSSSFSS  60
SLSSLADRSS LYSDYLAGGY SRAGWPGPPG VEAGSSFPSV DAFAGYKRTS AAEALYRQTL  120
LGTNSTIGQS DAWYATNALA KRPRYDLGSS LPIYPQRPGE KDCAHYMLTR TCKFGESCKF  180
DHPVWVPEGG IPDWKEVPLA VTSEAPPERP GEPDCPYFIK TQKCKFGPRC KYNHPKERVA  240
PLGVAENADP SVLPQRPSEP PCAFYTKTGN CKFGASCKFH HPKDIVIPSS GQVNGSGNEG  300
ALKNGSVMPV QPIATPASLH NSKGLPVRPG EVDCPFYLKT GSCKYGATCR YNHPDIYATN  360
PPAGAASFAT TPAAHLNFGV VNPAASMIQS IDPRLTQSTL GLGPAIYPQR PGQIECDFYM  420
KSGECKFGER CKFHHPINRF AHTQLAKESQ QESVKLTLAG LPRREGAVHC PYYMKTGACK  480
YGATCKFDHP PPGEVMTSAA TGSSTVGSPI VKLAGKSRFP TELQMGAIKL AIGDAILTFM  540
WVFLASTLGT ITFMIGTYLG VEGLFFDLFC MAFLVLIMLF LFGFLAEALG GASFNPTDFA  600
VFYAAGVRNE SLFSASLRLP AQIGMHSGFQ YLVNGGPVSF YMGYAMFKYA LLLEYLHLYQ  660
LVPYFTFAAG AAGGALAIME LMPAQYKHMV MGPSLKVELH TGAIAEGVLT FVITFFVLCI  720
ILRGPKNALL KNWLLAMTTV VIVFAGAGYT GPSMNPAIAF GWAYADNRHN TWEQFYVYWI  780
CPFVGAILSA SLFRVIFPPQ IVKKKKA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352782e-49AC235278.1 Glycine max strain Williams 82 clone GM_WBb0048F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258531.10.0PREDICTED: zinc finger CCCH domain-containing protein 37-like
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A164X5E80.0A0A164X5E8_DAUCS; Uncharacterized protein
STRINGXP_009782011.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-174floral homeotic protein (HUA1)