PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019806

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 293aa MW: 31898.1 Da PI: 7.7957

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019806	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.6	3e-09	89	145	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+k+++L++e ++L +l + l++ DCAR_019806 89 KRAKRILANRQSAARSKERKARYISELERKAQTLQTEATTLSAQLTLFQRDTTGLTN 145 9*****************************************998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.1E-15	85	149	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.507	87	150	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-9	89	143	No hit	No description
Pfam	PF00170	1.2E-7	89	135	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.6E-10	89	140	No hit	No description
CDD	cd14703	4.76E-21	90	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MLNNIDDSPA FSLGNNNNNA GGGEGEKCSS SSNNITRPRH RYSNSVDSTT NSSSALLFNT 60 ANPNPTESIE AKKAMAPDKL AELWNLDPKR AKRILANRQS AARSKERKAR YISELERKAQ 120 TLQTEATTLS AQLTLFQRDT TGLTNENTEL KLRLQAMEQQ AQLRDALNDA LKQEVERLRV 180 ATGEMSTHSD AYELGIPHVP YYQSAFSPHH PQPGSGGPLN GQLSRFYSIQ SSMSNQQQHP 240 VLSAAANAQV LSETLQQDPL GRFQGLDISN RGSHLVKSEG PSVSASESSS TF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254004.1	0.0	PREDICTED: transcription factor RF2b
Swissprot	O22873	4e-81	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A164ZXA3	0.0	A0A164ZXA3_DAUCS; Uncharacterized protein
STRING	XP_006486172.1	1e-116	(Citrus sinensis)
STRING	XP_006435914.1	1e-116	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	3e-75	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_019806

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]