PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019774
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CO-like
Protein Properties Length: 432aa    MW: 47180.1 Da    PI: 5.0531
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019774genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.91.4e-05444539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  C+ ++  ++  +Ce+++  lC  C ++ H+       H++
  DCAR_019774  4 LCDYCGVLRAMVYCESDSAKLCLRCDTSVHSAnllscrHQR 44
                 6*****999*********************65778888876 PP
2zf-B_box18.25.1e-064585341
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htvvp 41
                   +C++++ ++++  C d++  +C+ C  ++ +g  H++++
  DCAR_019774 45 SLVCNRCNCQPATVRCMDDKISFCQGCDWSGCSGsgHRLQK 85
                 568***************************99778899877 PP
3CCT44.74.8e-163904181644
          CCT  16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  kF K+irY+sRKa+A++R+RvKGrFvk+ 
  DCAR_019774 390 KFGKQIRYASRKARADTRKRVKGRFVKAG 418
                  8*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.143147IPR000315B-box-type zinc finger
SMARTSM003366.4E-8147IPR000315B-box-type zinc finger
CDDcd000213.29E-6447No hitNo description
PfamPF062033.9E-15364417IPR010402CCT domain
PROSITE profilePS5101711.538375417IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSGLCDYCGV LRAMVYCESD SAKLCLRCDT SVHSANLLSC RHQRSLVCNR CNCQPATVRC  60
MDDKISFCQG CDWSGCSGSG HRLQKLNSYT GSSIYQLSNS CTSLLELPYP SACDSSFTPM  120
AGSLMVNESS INSCLVHSPN ECSSVLVDDN TNRINELSSS IKFEDIVDPS TGVPLTSSYV  180
PECNNDQPSF LPAEEGSNLP KDMILGEGDD PCRGVDLDVA LNFECGYEMP GCSQDQPKYQ  240
RENEGLDCFG LEKLLQVAES NNQIGSTSET ASSIQPEGIT FQSPQVNGSA SLMQAMSGSA  300
SSMLMNPSCI RNISFPFPTG PLSLPSITEE SKVTDYQDCG LSPAFLAGES SWESTLETSS  360
PQARDKAKMR YNEKKKTRMY NFLPLTVMHK FGKQIRYASR KARADTRKRV KGRFVKAGEA  420
YDYDPLGKRI L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1481001e-110FJ148100.1 Daucus carota subsp. sativus clone BAC C162H12 genomic sequence.
GenBankFJ1481041e-110FJ148104.1 Daucus carota subsp. sativus clone BAC C004C03 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253196.10.0PREDICTED: putative zinc finger protein CONSTANS-LIKE 11 isoform X2
TrEMBLA0A162A5K70.0A0A162A5K7_DAUCS; Uncharacterized protein
STRINGGLYMA12G32221.21e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42311726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.16e-72B-box type zinc finger protein with CCT domain