PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019342
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 357aa    MW: 40700.6 Da    PI: 6.5129
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019342genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092843182155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++e+  LA+++gL+++q+ +WF N+R ++
  DCAR_019342 284 KWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 318
                  569*****************************885 PP
2ELK37.93.6e-13238259122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++LlrKYsgyL+sLkqE+s
  DCAR_019342 238 ELKNHLLRKYSGYLSSLKQELS 259
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-2094138IPR005540KNOX1
PfamPF037909.1E-2295137IPR005540KNOX1
SMARTSM012566.5E-27145196IPR005541KNOX2
PfamPF037911.5E-23149194IPR005541KNOX2
PROSITE profilePS5121311.296238258IPR005539ELK domain
PfamPF037892.5E-10238259IPR005539ELK domain
SMARTSM011883.5E-7238259IPR005539ELK domain
PROSITE profilePS5007112.73258321IPR001356Homeobox domain
SuperFamilySSF466892.69E-19259333IPR009057Homeodomain-like
SMARTSM003891.9E-12260325IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-27263324IPR009057Homeodomain-like
CDDcd000865.19E-11270322No hitNo description
PfamPF059202.3E-16278317IPR008422Homeobox KN domain
PROSITE patternPS000270296319IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDNMNDNNTS NNSRGASSFL YGIGGTSSSS SAHQLPLVMN GFHLPNDESS RFHHHPMVKM  60
EAGNHNSVHH RFHYPSAIRS HQENIDQSEG AAAEAIKAKI IAHPQYSSLL QAYMDCQKVG  120
APAEVMARLA AIRQDFEARQ QASVNCGEAS KDPELDQFME AYYDMLVKYR EELTRPLQEA  180
MEFMQRIETQ LNMLSTSPRQ IFNPDEKCEV IGSSEEDQDN SGGETELPQI DPRAEDRELK  240
NHLLRKYSGY LSSLKQELSK KKKKGKLPKD ARQKLLSWWD LHYKWPYPSE TEKVALAEST  300
GLDQKQINNW FINQRKRHWK PSEDMQFMVM DGLHPQNAAL YMEGHYVGEG PYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252699.10.0PREDICTED: homeotic protein knotted-1-like
SwissprotQ413301e-169KN1_SOLLC; Homeotic protein knotted-1
TrEMBLA0A162A6F30.0A0A162A6F3_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g08380.t011e-177(Vitis vinifera)
STRINGEOY156241e-178(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-134KNOTTED-like from Arabidopsis thaliana