PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019255
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 446aa    MW: 48567.3 Da    PI: 7.0714
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019255genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.3e-115277126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C +++rtG C yG++C+F+H+
  DCAR_019255 52 PGEPDCLYYLRTGMCGYGATCRFNHP 77
                 5789*********************8 PP
2zf-CCCH277.7e-09119137725
                  SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   7 rffartGtCkyGdrCkFaH 25 
                  ++f++tG CkyG++Ck++H
  DCAR_019255 119 QYFLKTGMCKYGSSCKYHH 137
                  59***************** PP
3zf-CCCH37.92.9e-12159184227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C +++rtG Ck+G  CkF+H++
  DCAR_019255 159 DEKPCAYYMRTGACKFGIACKFHHPQ 184
                  5789********************97 PP
4zf-CCCH28.92e-09290315227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+f+  G CkyG  Ck++H++
  DCAR_019255 290 DQPECRHFMNHGSCKYGMDCKYNHPR 315
                  689*********************96 PP
5zf-CCCH314.3e-10336360226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C++++ +G Ck+G+ C++ H+
  DCAR_019255 336 GQAVCSYYSMYGLCKFGPACRYDHP 360
                  7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.9E-55178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2915179IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-75377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-55678IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-45776IPR000571Zinc finger, CCCH-type
SMARTSM003560.071110139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.652115140IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5119137IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-5119140IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4120138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7156186IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633157185IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5159184IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10159184IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5161184IPR000571Zinc finger, CCCH-type
SMARTSM003560.006288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563288316IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-7290315IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6291318IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4294316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5333360IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6334361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108334362IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-7336360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MPDHRQVKRN VGVSDSSNPS VDHVQEGMRR LRVSEKEDDV GDDDSGIFPD RPGEPDCLYY  60
LRTGMCGYGA TCRFNHPSKI DLKIGQSGGE LPQRIGQPDC ELSGANFLPN FVIDACMLQY  120
FLKTGMCKYG SSCKYHHRLD RNGAGPVILN TLGLPMRQDE KPCAYYMRTG ACKFGIACKF  180
HHPQPDPAVS VTGPSHYGST DSSGLSYGGG LPAWSLPKTT YLSASHSGGL QTYMPVIYPP  240
SQELVSAPEW NPYMSSMSPA PSTNVYGESG FSGQIPLSYS GVSHLPERPD QPECRHFMNH  300
GSCKYGMDCK YNHPREKYTQ LAAGSLGPLG LPLRPGQAVC SYYSMYGLCK FGPACRYDHP  360
LLGYTYNYGS NLPTLSIHST SFSYQRTSPA IHSSETSPSK SPNIPNLTEQ EAASKKKSDA  420
KPPEDSPEQA RSPSASAEVP EAHSD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253249.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A164ZJH90.0A0A164ZJH9_DAUCS; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-157(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.23e-95C3H family protein