PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019147
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 369aa    MW: 41625.9 Da    PI: 5.6753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019147genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.5e-0693116226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  k  lC ff + G+C  G +CkF+H+
  DCAR_019147  93 KSILCEFFKA-GQCGKGYKCKFSHD 116
                  6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.51191118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-691116IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-691117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-593116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.671161199IPR000571Zinc finger, CCCH-type
SMARTSM003566.6161198IPR000571Zinc finger, CCCH-type
PfamPF165435.9E-18218295IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MPPKAAPKAS KTEIAKKQKS VEDKTFGLKN KNKSKNVQKY VKSIEASAIP KPDPSKLAAK  60
KKKDEEKARE KELNDLFKIA VVQPKVPVGV DPKSILCEFF KAGQCGKGYK CKFSHDLNIQ  120
RKGEKIDIYS DKRDEDTMDE WDQEKLEKVV ESKGKEYNQN KPTDIVCKHF LDAVEKKQYG  180
WFWSCPNGGK ECMYRHALPP GYVLKSQMKA LLEEESNKLA IEDEIENQRA KVTTTTPITT  240
EIFFQWKKKK VDAKEAGLAA QQAERAKNDR MSGRELFLAH ASLFVDDEDA AEYEKFEREE  300
PNIPEQKAPN NASSSQPSTS SVATKSEEVI SDIDDDDDEL DLDELNELEA SLSRTSLQIR  360
EPGQQAVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248731.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
RefseqXP_017248732.10.0PREDICTED: zinc finger CCCH domain-containing protein 11-like
SwissprotQ0JHZ21e-172C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A164ZGR50.0A0A164ZGR5_DAUCS; Uncharacterized protein
STRINGXP_008233385.11e-180(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA568078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-151C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]