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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C2H2 | ||||||||
Protein Properties | Length: 157aa MW: 17413.1 Da PI: 9.5938 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H +H DCAR_018890 37 YECKTCNRQFPSFQALGGHRASH 59 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F L H+r+H DCAR_018890 80 HECSICGAEFALGQALGGHMRRH 102 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.68E-9 | 35 | 102 | No hit | No description |
Pfam | PF13912 | 2.1E-13 | 36 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.097 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.092 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-10 | 79 | 103 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.265 | 80 | 102 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MTMKRSREDE QTMANCLMLL SQFGKSQSDL ISAGRVYECK TCNRQFPSFQ ALGGHRASHK 60 KPKLMAGDLL QQVPEKPKTH ECSICGAEFA LGQALGGHMR RHRVAMEANS STVTSSDDDH 120 KVGKVAPILK KSNSCKRVWG LDLNLMPYDN YLKLGW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor involved in light acclimation, cold and oxidative stress responses. May regulate a collection of transcripts involved in response to high-light, cold and oxidative stress. {ECO:0000269|PubMed:11069694, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By H(2)O(2), cold, drought, cold or heat stresses, wounding, cucumber mosaic virus (CMV), exposure to high-intensity light and low-oxygen conditions in roots. {ECO:0000269|PubMed:12368499, ECO:0000269|PubMed:14722088, ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:16183833, ECO:0000269|PubMed:18201973, ECO:0000269|PubMed:18922600}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251787.1 | 1e-115 | PREDICTED: zinc finger protein ZAT12-like | ||||
Swissprot | Q42410 | 7e-35 | ZAT12_ARATH; Zinc finger protein ZAT12 | ||||
TrEMBL | A0A164ZB49 | 1e-114 | A0A164ZB49_DAUCS; Uncharacterized protein | ||||
STRING | POPTR_0010s21650.1 | 1e-54 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 3e-37 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018890 |