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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_018698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Trihelix | ||||||||
Protein Properties | Length: 220aa MW: 26334.1 Da PI: 8.2959 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 51.4 | 2.9e-16 | 2 | 61 | 23 | 85 |
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 ++k++k lWe + km+e g++rsp qCk+kw+nl +ryk ++++ +++ ++++++++++ DCAR_018698 2 ETKRNKLLWELLATKMKELGYNRSPDQCKCKWKNLVTRYKGCETMGSEE---MKQQFSFYSEV 61 56889***************************************99984...45578888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 1.87E-14 | 2 | 44 | No hit | No description |
Pfam | PF13837 | 2.9E-14 | 3 | 63 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
METKRNKLLW ELLATKMKEL GYNRSPDQCK CKWKNLVTRY KGCETMGSEE MKQQFSFYSE 60 VQSIFGARME RMIWMEADDG AGGSKQKVTL LSSDEEDENE DSDLGDKKAA KSSKKRKVKC 120 STSTTNNSNV KEILDDFMKQ QKEMEMRWFK AMEAREQERK MRELEWRQRL EALETEKMMM 180 ETKWREREEE WRMREEARAQ KRDALMDTLL QKLLREDRN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017248751.1 | 1e-155 | PREDICTED: trihelix transcription factor GT-3b-like | ||||
Swissprot | Q9SDW0 | 3e-43 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A161XUJ6 | 1e-154 | A0A161XUJ6_DAUCS; Uncharacterized protein | ||||
STRING | XP_004506754.1 | 6e-75 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 8e-35 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_018698 |