PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018679
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 173aa    MW: 20114.6 Da    PI: 7.6539
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018679genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.7e-104990955
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  r RR+ri+++f  L++l+P        Kl+ +++Le+A+ Y+k+L+
  DCAR_018679 49 ARERRHRIREKFKILQSLVPGG-----SKLDTVSMLEEAILYVKYLK 90
                 699*****************95.....5*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0024089IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1345103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-114694IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-124695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-124693No hitNo description
PfamPF000108.6E-84989IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDYYFIYGNN TNYNETQQLE KKKGKKKGKK QACGSKEVKL STDPQSVAAR ERRHRIREKF  60
KILQSLVPGG SKLDTVSMLE EAILYVKYLK SQVWWLMHHP HQSQYDQNIN IDNTYNIDQL  120
VTNEHVQASA MVNDVNGLHL QNVNDYENQM RQQDEGAQQV MKVDDACLEY SW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12129KKGKKKGKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018859333.13e-31PREDICTED: transcription factor bHLH140-like
TrEMBLA0A164Z6W71e-126A0A164Z6W7_DAUCS; Uncharacterized protein
STRINGXP_009348213.13e-29(Pyrus x bretschneideri)
STRINGXP_009376442.13e-29(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.14e-25APRATAXIN-like