PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018074
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 283aa    MW: 32379.4 Da    PI: 7.753
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018074genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-0780101526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  lC+ff     C++G+ CkFaHg
  DCAR_018074  80 LCPFFKDDEKCRRGGACKFAHG 101
                  8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.73E-575105IPR000571Zinc finger, CCCH-type
SMARTSM003560.006175102IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.90176103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-578104IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-580101IPR000571Zinc finger, CCCH-type
SMARTSM0035645111134IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MARRLSSSTI NMHCRHCNHQ ADEYLVNMDP SFYETDEFRM YKYKVMLCPR HFSHDWTSCP  60
FTHLGERAYR RDPRHYLPIL CPFFKDDEKC RRGGACKFAH GLFEYFLHPG KYRTTRCTNG  120
RSCERKVCFF AHTEGELRKE WELTPDQIHD AFAFDSHMPV AIAPRQVLRA LSARSRATTS  180
VAGDRPNSPV PNTHFVAQAP IADPSRARKD KGIATDDSAA TDPPALTFEL SSPASIWSAA  240
LNDWPSDFDG LAEQLKEMVL TGRNNNSGEE APVWTREYRL WN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A162A1T00.0A0A162A1T0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA717133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.12e-42C3H family protein