PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018019
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 253aa    MW: 28125.8 Da    PI: 5.8286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018019genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.4e-135396755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+ YI++Lq
  DCAR_018019 53 VSERNRRKKLNDKLYALRAVVPNI-----TKMDKASIIKDAISYIQELQ 96
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.8664695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-1350100No hitNo description
SuperFamilySSF474597.33E-1850112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-1652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1653112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-105496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MESLDEYKLY WETNRYLHTE ELDSLVLDET LSAYYDSSSP DAPHSSVAPK NIVSERNRRK  60
KLNDKLYALR AVVPNITKMD KASIIKDAIS YIQELQEQER RIQTEITQLE SMASKRSNSV  120
DEFNQAGADT TTSVVSKKKR TDQQQLIFSN NSGGSRSSPS PVQVIELRVS HVGGKTVVVS  180
ITCSKQRDTI VKLCEAFESL NLKVITANIT SFSGTLLKTV FIEAGEEEID LLRTKIQSAI  240
AALNFPDSPI SC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1451111969Transcription factor MYC2
5gnj_B3e-1451111969Transcription factor MYC2
5gnj_E3e-1451111969Transcription factor MYC2
5gnj_F3e-1451111969Transcription factor MYC2
5gnj_G3e-1451111969Transcription factor MYC2
5gnj_I3e-1451111969Transcription factor MYC2
5gnj_M3e-1451111969Transcription factor MYC2
5gnj_N3e-1451111969Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250303.10.0PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV96e-77BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A164YNL10.0A0A164YNL1_DAUCS; Uncharacterized protein
STRINGXP_008223870.11e-104(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-67bHLH family protein