PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_017831 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | C3H | ||||||||
Protein Properties | Length: 218aa MW: 24092.8 Da PI: 8.6452 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.5 | 1.6e-11 | 110 | 135 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++t++C+ + G+C++Gd+C+FaHg DCAR_017831 110 WRTKICSKWEIDGQCPFGDKCHFAHG 135 79***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.23E-9 | 109 | 140 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-7 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-14 | 110 | 141 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-9 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MNNNDHPSSK PLASKPPPYP SQNHGGSGPQ GHKDSKQMDS QTRCNFLHES PSRFRSDVAR 60 APPRESTAIN IGKVGPVMEQ NSNTNTGQAA TVKHFNANTD AFQVNMTKPW RTKICSKWEI 120 DGQCPFGDKC HFAHGHSELQ VPGAHSEAEI MTNAQYFSTK PQPQLLSDAL ATKAEAILPT 180 QERVNNEVSP KWKLHKKITT IYGDWPEDLT PPESSRR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017250890.1 | 1e-126 | PREDICTED: zinc finger CCCH domain-containing protein 39-like | ||||
TrEMBL | A0A164YJ30 | 1e-162 | A0A164YJ30_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6553 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 1e-25 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_017831 |