PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017764
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 404aa    MW: 45840.1 Da    PI: 6.1988
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017764genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.61.8e-073313632254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   +yp++e++++L +++gL+ +q+ +WF N+R +
  DCAR_017764 331 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 363
                  59*****************************87 PP
2ELK28.92.6e-10284305122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELKh+L+++Y+++++++++E++
  DCAR_017764 284 ELKHELKQGYKEKIVDIREEIL 305
                  9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.4E-17117161IPR005540KNOX1
PfamPF037903.5E-16119160IPR005540KNOX1
SMARTSM012564.6E-24172227IPR005541KNOX2
PfamPF037911.6E-18176226IPR005541KNOX2
PROSITE profilePS512139.969284304IPR005539ELK domain
PfamPF037899.3E-7284305IPR005539ELK domain
SMARTSM011886.1E-4284305IPR005539ELK domain
PROSITE profilePS5007111.677304367IPR001356Homeobox domain
SuperFamilySSF466895.99E-16306370IPR009057Homeodomain-like
SMARTSM003897.6E-11306371IPR001356Homeobox domain
CDDcd000862.02E-11307368No hitNo description
Gene3DG3DSA:1.10.10.607.2E-25311368IPR009057Homeodomain-like
PfamPF059201.1E-17324363IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MAFNDHISQA MALQHYTDQQ LTADVSPEVK TGPPTWLNNA ILRQQNHHHY AGETNFLHLQ  60
TTNSDSSASN QWLSRPINIE NDVDHNNSMM QISDDEKKFN HMSGLNDVAD GGDWQSVKCK  120
AEILSHPLYD ELLSAHVSCL RIATPVDQLP RVDAQLAQSH QVVAKYSGLG DSINQPLDDK  180
DLDHFMTHYV LLLSSFKEQL QQHVRVHAME AVMACWELEQ SLQSLTGIAP GEGTGSTMSD  240
DDDDQAESDT NLFEGSLDGQ DSMGFGPLVP TESERSLMER VRQELKHELK QGYKEKIVDI  300
REEILRKRRA GKLPGDTTSL LKAWWQSHSK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  360
RKRNWHSNPS SSTVPKSKRK SKRCCHSHLH VISFKHRLAP EED*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253902.10.0PREDICTED: homeobox protein knotted-1-like LET12 isoform X1
SwissprotP480001e-172KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A164YHN40.0A0A164YHN4_DAUCS; Uncharacterized protein
STRINGVIT_11s0118g00800.t010.0(Vitis vinifera)
STRINGGSMUA_Achr7P05170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-167KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]