PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017611
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 632aa    MW: 68904.8 Da    PI: 5.1439
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017611genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174667223
                 EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                 +Cp C+k F +   L  H+r H
  DCAR_017611 46 VCPQCNKEFGSGKALGGHMRIH 67
                 6*******************99 PP
2zf-C2H213.20.00027437459123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+ksFs++  L  H ++H
  DCAR_017611 437 YRCSTCNKSFSSHQALGGHRSSH 459
                  9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-54169No hitNo description
PfamPF139121.1E-84567IPR007087Zinc finger, C2H2
PROSITE profilePS501579.5154568IPR007087Zinc finger, C2H2
SMARTSM003550.0624567IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.4E-44668IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
SMARTSM003550.27101123IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.2E-8101123No hitNo description
PROSITE profilePS501579.182101128IPR007087Zinc finger, C2H2
PfamPF139122.6E-4103125IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
SuperFamilySSF576671.2E-8432459No hitNo description
PfamPF139121.2E-8437460IPR007087Zinc finger, C2H2
SMARTSM003550.017437459IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115437464IPR007087Zinc finger, C2H2
PROSITE patternPS000280439459IPR007087Zinc finger, C2H2
SuperFamilySSF576675.8E-5536561No hitNo description
PfamPF139122.3E-11537560IPR007087Zinc finger, C2H2
PROSITE profilePS501579.203537559IPR007087Zinc finger, C2H2
SMARTSM003550.068537559IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280539559IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MESGPSHQEQ SSNKFLIKLK MPVKMDHHGD QEVATIQHVT NNTPRVCPQC NKEFGSGKAL  60
GGHMRIHAEA IRKQQRRQKM VGKLKDEEDG VGFQRLMNKK AVCNLCGKNF PSMKSVYGHM  120
RCHPDRDWRG IQPPDEVLVE NLDQRISDED YEEEDDGSVG GGDCGPVGDL LADIPKWGEK  180
ARRGQKGVRK SSVEAVGSSG VMVSEEEDEE EEDDEDEDEF EDEDEEERLR NAVNDLMLLK  240
QVDVSGSSGV STLAAAAEIS RDVNAGLDQN QEGSYGTSLT VNNRGEGSGN VEFRASGFVQ  300
GGYKEMKRSF GMVEDECHDH LVMEKMRMGE GGSDDHVIKN MSDHHMGQEA NAAHHVVENY  360
GDYDSRRTEL MVMNNGGHKD FDWANHKEDN GEMVMGSSKN KKAKKMKLMM DLDQEKASAA  420
GSSAQGMVSG STTTEKYRCS TCNKSFSSHQ ALGGHRSSHN KFKLTIINGD SGLNNQSSSV  480
NADRHRAGNE GFDQNLHQLI TPGMENWVMS QDCANKKDST IEGAGSSKGD HSSSIIHQCE  540
VCNKIFPTGQ ALGGHKRCHW TASADQTDSQ PQAQAPLVMS SSGEEASTQT GGTHIQTISI  600
DLNLPPPMED DLEAQGGGGG GAAEHATRLH L*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250862.10.0PREDICTED: uncharacterized protein LOC108221499
TrEMBLA0A164YDU90.0A0A164YDU9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-21C2H2 family protein