PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_017058

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 321aa MW: 36467.5 Da PI: 7.964

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_017058	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.8	1.2e-12	60	146	2	85
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+++ +++Lie ++ ++l+rg+lk+++W++v +++ +++ f+ + q+k++++ ++k+ykk+k + + + + + ++p+fd l DCAR_017058 60 WSNEATKTLIETWGDKYKELNRGSLKQTHWQQVTDAVnlrHAGEFSCTDAQVKNRIDTVKKKYKKEKIRVLESAGNYVPKWPFFDFL 146 ************************************999999*******************988888889999***977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.4E-19	60	148	No hit	No description
PROSITE profile	PS51029	9.191	60	154	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MTTSHRSFHR PLPSWSALSA SRRSFTGNSQ LPITAGDTDE NPISPPTRME KLDPTREIIW 60 SNEATKTLIE TWGDKYKELN RGSLKQTHWQ QVTDAVNLRH AGEFSCTDAQ VKNRIDTVKK 120 KYKKEKIRVL ESAGNYVPKW PFFDFLDFLI GSAAPAPEDG QPICRRGRKM SFPATFEIPV 180 GRRSKRLAPE IVMGAGNGDA RKRKFDAMAE LASKIVAEEE EDGGEGEIRK VAEAIEKFGE 240 RYERVEREKM DRMIELEKHK MKLAIDLNVQ IMNYVSELRM KVDGNEQVGA VDDDKGSNFF 300 FLLCQFECSN FVAYNVMSPF *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017249145.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A164Y0J8	0.0	A0A164Y0J8_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1318	23	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	8e-34	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	DCAR_017058