PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_017013
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 635aa    MW: 69951 Da    PI: 9.2112
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_017013genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07956344
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrw 44
                      W t+E++ll+ avk++G+ +W+++  +m       + +t+ +c +r+
      DCAR_017013  9 TWGTWEELLLAFAVKRYGTSSWDSVCLEMKkrcsslTCLTPLHCMLRF 56
                     7*****************************666666666677776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002493.5E-6941IPR001005SANT/Myb domain
SMARTSM002973.1E-8251360IPR001487Bromodomain
SuperFamilySSF473705.23E-11254355IPR001487Bromodomain
Gene3DG3DSA:1.20.920.105.7E-8259355IPR001487Bromodomain
CDDcd043691.69E-11262355No hitNo description
PROSITE profilePS500149.587270333IPR001487Bromodomain
PROSITE patternPS006330275333IPR018359Bromodomain, conserved site
PfamPF004391.2E-5280343IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MEKAEEQDTW GTWEELLLAF AVKRYGTSSW DSVCLEMKKR CSSLTCLTPL HCMLRFDHLK  60
SRYADNTTDH SFVPWLDDLR NRRIAELKAQ LERYDLSILS LHSKVKRLRE EGEESFRGCV  120
EKLGSKDGSS EVKLEEFLPE KVIEEVVGGK DENLETCEVK PENDVIRAES CNGSTDSISK  180
ETGKVTVVKV EAEVAVNELA EVCKTVAESK KLGVIESSDV LSTTSRLRKE EIEKLQFGSC  240
VGAGRENESQ LLKEMSSVSQ PLIEILEILK SYKLGLVSER LLDSQETSNY RNLIRQHIDI  300
KSVYQNVVGG SYSDSEHKFF RDLLLLVNNA ILFFEKNISE SNAATELRQH ISEKLVQRNF  360
KADLTAGKQT SVPPRSLLSE IAREPSDSWQ LKSGIEGITR VSRKRSSFAS RGSISSSSGS  420
DRRSLQAAAA MPKPVVESKQ STKFPAADKH RQITKRTTNG SALNSISPKK NGKDLATTPC  480
DEDPVVIISD QTRGKLGSPT EPSQSKGEKN VASTGMARSA ANFLDRLNKS SPPNNEPCTD  540
VLENSMCSPH QGGGKSKQKG NRGSKGGSKK EKAKRSSGGK LLNEESSLTR RQLGRPPKRA  600
AAPTPGLAGS GKCNRAIEDI DAETPKQSKK RSRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252774.10.0PREDICTED: uncharacterized protein LOC108223169
TrEMBLA0A164XZE90.0A0A164XZE9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-42DNA-binding bromodomain-containing protein