PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_016890

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

G2-like

Protein Properties

Length: 183aa MW: 20475.8 Da PI: 7.0403

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016890	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	23.8	9.8e-08	1	18	36	53
G2-like 36 mkvkgLtlehvkSHLQkY 53 m+v gLt++hvkSHLQ++ DCAR_016890 1 MGVAGLTIYHVKSHLQMW 18 99**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-6	1	18	IPR009057	Homeodomain-like
Pfam	PF14379	2.2E-23	58	103	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MGVAGLTIYH VKSHLQMWIY FLMSKYRQAN YLTESAADGS KEDNKISGDS MDSPPGLQIN 60 EALRMQMEVQ KRLHEQLEVQ RQLQMRIEAQ ARYLQKIIEE QEKLGSSLIA PEGPPGAEDK 120 QFHPHSHQAA DASTPSQSPQ KKQKVNNEGS DRSAPSSAAS EIVTHWSRNL YNYHSHFSGP 180 SS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251952.1	1e-92	PREDICTED: uncharacterized protein LOC108222558
Swissprot	Q9SJW0	7e-40	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A164XVV6	1e-132	A0A164XVV6_DAUCS; Uncharacterized protein
STRING	EMJ03601	6e-59	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2796	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.2	6e-43	G2-like family protein

Link Out ? help Back to Top
Phytozome	DCAR_016890