PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016795
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 427aa    MW: 47949.2 Da    PI: 7.7664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016795genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.7e-51221571128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  +ppGfrFhPtdeel+++yL+ kv + +   + +i+evd++++ePw+Lp  +k +e+ewy +s rd+ky++g r+nrat +gyWkatgkdkev+s+   
  DCAR_016795  22 MPPGFRFHPTDEELITFYLASKVYNASSLSALHISEVDLTRCEPWELPDVAKMGEREWYLYSLRDRKYPSGLRTNRATGAGYWKATGKDKEVYSSstg 119
                  79*********************9999555467***************8888899***************************************8655 PP

          NAM  96 kgel.......vglkktLvfykgrapkgektdWvmheyrl 128
                  +          vg+kktLvfykgrap+gekt+Wvmheyrl
  DCAR_016795 120 N--SgnaapalVGMKKTLVFYKGRAPRGEKTKWVMHEYRL 157
                  1..14556777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-5718194IPR003441NAC domain
PROSITE profilePS5100555.62422194IPR003441NAC domain
PfamPF023654.9E-2623157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MLAIEDIVSE LRGGGDVNEQ GMPPGFRFHP TDEELITFYL ASKVYNASSL SALHISEVDL  60
TRCEPWELPD VAKMGEREWY LYSLRDRKYP SGLRTNRATG AGYWKATGKD KEVYSSSTGN  120
SGNAAPALVG MKKTLVFYKG RAPRGEKTKW VMHEYRLDGH FSCRHTCKVT RLDGHFSCRH  180
TCKEEWVICR IYLKLGEKKN GVLPVEERSS YMQEASNSSL SHLVDQTIKT GPALQPYKTL  240
LQSLQNQNQL NMSHITHESH LKSLINNQSS VGAVVPQFQT NSLVLNGLQT SFSSPTETKD  300
KQDPKLLNTL LSSHQDYYCF NKQEAPPFAK ICKTEPNFLH FHLPHSNDHP QTPKFQPLLP  360
TNHTENPLVF TNLDGANCRF SDCDMSMALS SSCSEVVALN RASFKQMLLD PPTNIAAAAE  420
SWPFHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-462219417165NO APICAL MERISTEM PROTEIN
1ut4_B3e-462219417165NO APICAL MERISTEM PROTEIN
1ut7_A3e-462219417165NO APICAL MERISTEM PROTEIN
1ut7_B3e-462219417165NO APICAL MERISTEM PROTEIN
3swm_A3e-462219420168NAC domain-containing protein 19
3swm_B3e-462219420168NAC domain-containing protein 19
3swm_C3e-462219420168NAC domain-containing protein 19
3swm_D3e-462219420168NAC domain-containing protein 19
3swp_A3e-462219420168NAC domain-containing protein 19
3swp_B3e-462219420168NAC domain-containing protein 19
3swp_C3e-462219420168NAC domain-containing protein 19
3swp_D3e-462219420168NAC domain-containing protein 19
4dul_A3e-462219417165NAC domain-containing protein 19
4dul_B3e-462219417165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251464.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3-like isoform X1
SwissprotQ9S8513e-92NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A162A1720.0A0A162A172_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s00730.11e-115(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.16e-93NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]