PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016593
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 508aa    MW: 56600 Da    PI: 7.5739
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016593genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001194112321
                  ETTTTEEESSHHHHHHHHH CS
      zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                  C+ Cgk F+++  L  H++
  DCAR_016593  94 CKECGKGFPSWKALFGHMK 112
                  ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.1E-5931IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995931IPR007087Zinc finger, C2H2
SMARTSM003553.7931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6692119IPR007087Zinc finger, C2H2
SMARTSM003550.007292114IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-893116IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-693114No hitNo description
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-6332359No hitNo description
PfamPF139121.4E-8337361IPR007087Zinc finger, C2H2
PROSITE profilePS501579.764337364IPR007087Zinc finger, C2H2
SMARTSM003554.7337359IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280339359IPR007087Zinc finger, C2H2
PfamPF139125.6E-11418441IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328418440IPR007087Zinc finger, C2H2
SMARTSM003550.4418440IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280420440IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDTDEELKHM CKLCYKSFPC GRSLGGHMRS HVIYTSDLGD HQEKLLHKKK LSLIDYDNDS  60
VINDAAGYGL RENPKKTCKF EDLSEAGLLR DKICKECGKG FPSWKALFGH MKCHSDKLIR  120
TRMEEQGSET NGDQSDHETP PSRKKRTTRN IRRRDNCNIA SAATTASSSL SFNANASSSL  180
SGVEQEQEEV AMCLIMLSND VSHWNGLNSV GESSGNNSEL LETKKSASLC GELVNFKKPS  240
KGKPEFELEP QMKISEMKVL NGELETSPEA EISDFQDSIS GTGKILLKEN EYNHKPDLAS  300
KKKHNSRKRR SRELFNSDMG TNYSEMYSEN IEKMNKFECA SCHKAFHSYQ ALGGHRASHK  360
KHNGSCYDSK TDGNENNTGT GKSLSQNQNA DKNGPSEQKV VADTSNGRKK LVTTGVSHEC  420
SICFRVFSSG QALGGHKRSH LIADAKNNQS TSTSTVIDHK PVVETRNFLD LNLPAPNEET  480
DTSELEFNPW WIVSNHRHDS FLNFLSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310SRKRRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251529.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A164XM460.0A0A164XM46_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.12e-25C2H2-like zinc finger protein