PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016571
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NAC
Protein Properties Length: 343aa    MW: 38811.1 Da    PI: 8.4291
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016571genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.76.4e-55141401129
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                  lppGfrFhPtdeel+++yL kkv ++++++ ++i++vd++k+ePwdLp+ +k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ +++
  DCAR_016571  14 LPPGFRFHPTDEELISHYLSKKVVDSNFSA-TAIAQVDMNKIEPWDLPRIAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIYR-GKS 109
                  79**************************99.88***************8888899***************************************.999 PP

          NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                  lvg+kktLvfy grapkgek++Wv+heyrle
  DCAR_016571 110 LVGMKKTLVFYGGRAPKGEKSNWVIHEYRLE 140
                  *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-6110164IPR003441NAC domain
PROSITE profilePS5100558.86414164IPR003441NAC domain
PfamPF023652.0E-2815139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MENFYAKEDD QVLLPPGFRF HPTDEELISH YLSKKVVDSN FSATAIAQVD MNKIEPWDLP  60
RIAKMGEKEW YFFCVRDKKY PTGLRTNRAT AAGYWKATGK DKEIYRGKSL VGMKKTLVFY  120
GGRAPKGEKS NWVIHEYRLE GKYSLQNLPK TARNEWVICR VFKKSAGGKK VHISGLMRMN  180
SVEKNEMNPI SLPPLVDNSA TDSLHVPCFS NTFDIHKSNM MTYLNNPLYP LNNSNPSDLF  240
PRLCPPNPSQ SLEIQENLQC PGTLPGQDQG MLRGLFEDYG TSVRQNLKTE NEMISLSHET  300
GLSRDMKNEI SSVVSNLDVG RRPFDAPSTS VGPLDLDSLW NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-541117017174NAC domain-containing protein 19
3swm_B3e-541117017174NAC domain-containing protein 19
3swm_C3e-541117017174NAC domain-containing protein 19
3swm_D3e-541117017174NAC domain-containing protein 19
3swp_A3e-541117017174NAC domain-containing protein 19
3swp_B3e-541117017174NAC domain-containing protein 19
3swp_C3e-541117017174NAC domain-containing protein 19
3swp_D3e-541117017174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250016.10.0PREDICTED: NAC domain-containing protein 100
SwissprotQ9FLJ21e-138NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A164XLG80.0A0A164XLG8_DAUCS; Uncharacterized protein
STRINGVIT_17s0000g06400.t011e-163(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15224279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-137NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]