PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

DCAR_016464

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 185aa MW: 20577.9 Da PI: 7.8596

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_016464	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.4	1.3e-39	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+l++kC +dC+lapyfp e+ ++f vhk+FGa++v+kll+++ +++r++++s+lvyeA+ar+rdPvyG+vg i+ lq q+e+l++el++++ DCAR_016464 41 PCAACKFLKKKCRPDCILAPYFPPEELQNFISVHKIFGATRVSKLLNEVLPHQRDETLSCLVYEAQARLRDPVYGSVGAISMLQLQVERLQKELDAAN 138 7*********************************************************************************************9998 PP DUF260 99 ee 100 +e DCAR_016464 139 AE 140 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.813	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.5E-38	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MESEFLRLSS NFNLTVIDFD GSIVVRTNAA SFNAVRYNYS PCAACKFLKK KCRPDCILAP 60 YFPPEELQNF ISVHKIFGAT RVSKLLNEVL PHQRDETLSC LVYEAQARLR DPVYGSVGAI 120 SMLQLQVERL QKELDAANAE LVNYACGYNH CCCHLDMGGS TAALPAPSAC LKIQCVIMLR 180 FHHK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-53	40	169	10	131	LOB family transfactor Ramosa2.1
5ly0_B	2e-53	40	169	10	131	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ148397	2e-61	FJ148397.1 Daucus carota subsp. sativus clone BAC C055M03 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017250579.1	1e-135	PREDICTED: protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	5e-51	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A161YJ03	1e-134	A0A161YJ03_DAUCS; Uncharacterized protein
STRING	VIT_17s0000g09010.t01	3e-53	(Vitis vinifera)
STRING	EOY20851	4e-53	(Theobroma cacao)
STRING	POPTR_0001s35280.1	2e-53	(Populus trichocarpa)
STRING	POPTR_0012s08540.1	4e-53	(Populus trichocarpa)
STRING	cassava4.1_017634m	2e-53	(Manihot esculenta)
STRING	XP_002521459.1	3e-53	(Ricinus communis)
STRING	XP_009779904.1	3e-53	(Nicotiana sylvestris)
STRING	XP_009613707.1	3e-53	(Nicotiana tomentosiformis)
STRING	PGSC0003DMT400046644	5e-53	(Solanum tuberosum)
STRING	XP_010108819.1	2e-53	(Morus notabilis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	2e-53	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_016464

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]