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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_016172 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | Dof | ||||||||
Protein Properties | Length: 218aa MW: 23574.8 Da PI: 7.3383 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.6 | 1.4e-38 | 16 | 76 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++lkcprCds+ntkfCyynny+lsqPr++Ck+C+ryWtkGG+lrn+PvGgg+rk k+s DCAR_016172 16 EQEHLKCPRCDSSNTKFCYYNNYNLSQPRHLCKNCKRYWTKGGTLRNIPVGGGSRKVTKRS 76 57899***************************************************88776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-27 | 6 | 71 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.6E-33 | 18 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.369 | 20 | 74 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 22 | 58 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MQDPSTYSQI NLQFPEQEHL KCPRCDSSNT KFCYYNNYNL SQPRHLCKNC KRYWTKGGTL 60 RNIPVGGGSR KVTKRSSNPK KSTNSKSTQE KQEPLSASAS VINTKDQDGS LLEIGGTFSS 120 LLEVNNGQFG NMIEGLNASG SPSLQLGDFS QNQSNSGLGS SLVANPFVEF GNNKDSEGFL 180 GVQHDQDSSS WSGTSGDPDL AMYTPGSSFS VDKSFNL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00199 | DAP | Transfer from AT1G51700 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017249745.1 | 1e-159 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Swissprot | O82155 | 2e-38 | DOF17_ARATH; Dof zinc finger protein DOF1.7 | ||||
TrEMBL | A0A164XAQ9 | 1e-157 | A0A164XAQ9_DAUCS; Uncharacterized protein | ||||
STRING | XP_010267036.1 | 2e-77 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-37 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_016172 |
Publications ? help Back to Top | |||
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