PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016125
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GRAS
Protein Properties Length: 556aa    MW: 61853.2 Da    PI: 6.3446
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016125genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.92.7e-741685452374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshlta 98 
                  ++lL  cA a+++g+l+++q+lL  l+elasp+gd+++Rlaa+ ++AL + l+   +++y++  ++ + ++ +      +l + +++ P++++ + +a
  DCAR_016125 168 EQLLNPCALAITAGNLNRVQHLLYVLHELASPTGDANHRLAAHGLRALTHLLSA--PQTYSISaKSMNFASAEPRFFKDSLIYINDIHPWFTIPNNIA 263
                  689*************************************************99..8888765344455544455555666669************** PP

         GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlva 183
                  N+ Il+ ++++   + +Hi+D+++s+G+QWp+Ll+ L+ Rp+gpp  +R+T++++++ +               +    L+ +A+ l+v++++++l  
  DCAR_016125 264 NSSILQILSQQqspQNLHIVDIGVSHGVQWPTLLEGLSRRPGGPPsLVRLTVIAPSSDSnqssevpfaVGPPGYSSVPHLTAYAKLLNVNLHISILED 361
                  *********99888999************************9999678******9776676555555533334445568****************988 PP

         GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklp.r 277
                  ++l++l+ + L   p+E+l+++ ++++h++    ++ ++ r+e+L++++sl+Pk ++++e++  +++ n ++F+++f++ +ey + ++ds++a +   
  DCAR_016125 362 HALQSLDAQVLGSTPDETLIICAQFRVHQIS---HNNPDDRTEFLRAMRSLEPKAMILSENDtdCSCiNCGNFATGFARRVEYLWRFLDSTSAAFKgG 456
                  8*****************************8...66667788******************9944555899*********************7766504 PP

         GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +se+r+++E e       +++++ g++    +e++e+W er++ aGF+  +++e+++++a+ ll+k++  +++rv+e +g++ l Wk++p+ ++S W+
  DCAR_016125 457 DSEQRRMIEGE-----TAKALTNTGEM----NERKEQWCERMQGAGFTREAFREDVVEEARVLLKKYDrHWEMRVDEMNGCAGLWWKGQPVSFCSLWT 545
                  55777777766.....78889999998....78888********************************9999*************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.84141524IPR005202Transcription factor GRAS
PfamPF035149.2E-72168545IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MTPEVPEPNP TTDHVLDWVE GSLAYHPSFY PYSFDDNNNA LTDDSWLDVC QDLDQILVSN  60
SFTSDNHYTA PITTASTSTL LVDPIISNHL SVSPPETSKK RKASGEAISD ASQSHKKNQT  120
LRSNEADGDR VVVDQRVSIK RAGNRRGGKH LAASDCKNSE NEDGRWAEQL LNPCALAITA  180
GNLNRVQHLL YVLHELASPT GDANHRLAAH GLRALTHLLS APQTYSISAK SMNFASAEPR  240
FFKDSLIYIN DIHPWFTIPN NIANSSILQI LSQQQSPQNL HIVDIGVSHG VQWPTLLEGL  300
SRRPGGPPSL VRLTVIAPSS DSNQSSEVPF AVGPPGYSSV PHLTAYAKLL NVNLHISILE  360
DHALQSLDAQ VLGSTPDETL IICAQFRVHQ ISHNNPDDRT EFLRAMRSLE PKAMILSEND  420
TDCSCINCGN FATGFARRVE YLWRFLDSTS AAFKGGDSEQ RRMIEGETAK ALTNTGEMNE  480
RKEQWCERMQ GAGFTREAFR EDVVEEARVL LKKYDRHWEM RVDEMNGCAG LWWKGQPVSF  540
CSLWTTDRKQ KRKVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B4e-3116354483472Protein SHORT-ROOT
5b3h_B2e-3116354429418Protein SHORT-ROOT
5b3h_E2e-3116354429418Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250505.10.0PREDICTED: nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A161ZZS60.0A0A161ZZS6_DAUCS; Uncharacterized protein
STRINGXP_009594760.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49492139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-135GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]