PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016105
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 447aa    MW: 50620.2 Da    PI: 9.1047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016105genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.8e-07422444225
                  -S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                  ++ lCr++ar G C yG++CkF H
  DCAR_016105 422 GRQLCRHYAR-GRCYYGEKCKFLH 444
                  688*******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689063.11E-775119No hitNo description
Gene3DG3DSA:1.10.720.303.0E-975119IPR003034SAP domain
SMARTSM005133.1E-584118IPR003034SAP domain
PROSITE profilePS508009.60784118IPR003034SAP domain
PfamPF020372.2E-1085118IPR003034SAP domain
PROSITE profilePS5010314.953420446IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6421445IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-5422444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5424444IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEIPEQIDYL ESETDSYDSE DDPAFDILEE SRSKLSKLSI KSKTQSSISI EIDDETEDST  60
GNVATENDQQ GYDIVQKCIQ AGQVDKLKVD QCKLYLRKHG LRLTGKKDVL IQRIKEHLDI  120
VNGGGEVKYP PSSFILNCKG DACMGDVVMF EQTVYEMFSI ASRSSVGPPV GIRTVAGRIV  180
KESYGAAKQQ HTFTVEVLWS KGVRPHPPLH PLLIKGRNLY KLKTMRQRWQ DEGERQKILL  240
EKHSRGTIAR SNRDTRMQEN EAKKMLKTNR SMKSENQNKK IREAKTSDTS VSLANNSMAW  300
HQLNNQQNLH PMYQVPLVNV AVTRVQPLMQ KSSQPEHVEQ KKCLYSAPSE ASYGGGTSLF  360
RNANVAPERF CDRQVLANIN QNSYGYQHNM IHNQGHGQFL LQRTSATATS TGNPYQKPMN  420
GGRQLCRHYA RGRCYYGEKC KFLHEC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251455.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1
TrEMBLA0A161ZZR40.0A0A161ZZR4_DAUCS; Uncharacterized protein
STRINGVIT_09s0002g00800.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA330388