PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | DCAR_016105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 447aa MW: 50620.2 Da PI: 9.1047 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.6 | 1.8e-07 | 422 | 444 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++ lCr++ar G C yG++CkF H DCAR_016105 422 GRQLCRHYAR-GRCYYGEKCKFLH 444 688*******.************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF68906 | 3.11E-7 | 75 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.720.30 | 3.0E-9 | 75 | 119 | IPR003034 | SAP domain |
SMART | SM00513 | 3.1E-5 | 84 | 118 | IPR003034 | SAP domain |
PROSITE profile | PS50800 | 9.607 | 84 | 118 | IPR003034 | SAP domain |
Pfam | PF02037 | 2.2E-10 | 85 | 118 | IPR003034 | SAP domain |
PROSITE profile | PS50103 | 14.953 | 420 | 446 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 421 | 445 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.4E-5 | 422 | 444 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 424 | 444 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 447 aa Download sequence Send to blast |
MEIPEQIDYL ESETDSYDSE DDPAFDILEE SRSKLSKLSI KSKTQSSISI EIDDETEDST 60 GNVATENDQQ GYDIVQKCIQ AGQVDKLKVD QCKLYLRKHG LRLTGKKDVL IQRIKEHLDI 120 VNGGGEVKYP PSSFILNCKG DACMGDVVMF EQTVYEMFSI ASRSSVGPPV GIRTVAGRIV 180 KESYGAAKQQ HTFTVEVLWS KGVRPHPPLH PLLIKGRNLY KLKTMRQRWQ DEGERQKILL 240 EKHSRGTIAR SNRDTRMQEN EAKKMLKTNR SMKSENQNKK IREAKTSDTS VSLANNSMAW 300 HQLNNQQNLH PMYQVPLVNV AVTRVQPLMQ KSSQPEHVEQ KKCLYSAPSE ASYGGGTSLF 360 RNANVAPERF CDRQVLANIN QNSYGYQHNM IHNQGHGQFL LQRTSATATS TGNPYQKPMN 420 GGRQLCRHYA RGRCYYGEKC KFLHEC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017251455.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 62-like isoform X1 | ||||
TrEMBL | A0A161ZZR4 | 0.0 | A0A161ZZR4_DAUCS; Uncharacterized protein | ||||
STRING | VIT_09s0002g00800.t01 | 1e-122 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3303 | 8 | 8 |
Link Out ? help Back to Top | |
---|---|
Phytozome | DCAR_016105 |