PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016100
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 414aa    MW: 45948.3 Da    PI: 9.879
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016100genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.46e-1684171186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +    + ++  ++ +qCk++++ ++k+yk +k+  +++ ++ s ++p++++l+
  DCAR_016100  84 CWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVADIVssreHFGKTPKTDIQCKNRIDTVKKKYKSEKAKIGSG-CGPS-KWPFYERLD 171
                  7*************************************75333334566777**********************8.6665.8******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2682173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDDDDDEIQS HPSPSPRSES PPSPHPNGRI TVTVAAAPPP NNTLTLALPI QQQPPQQQLQ  60
LLPPPQPHLL QQRIGGNGGG REDCWSEAAT AVLIDAWGER YLELSRGNLK QKHWKEVADI  120
VSSREHFGKT PKTDIQCKNR IDTVKKKYKS EKAKIGSGCG PSKWPFYERL DQLIGPSAAK  180
IHSGSGGGGG GSAGTSSALV SPAFVPKGVP MGIPVGVRSL PFYKQQQQKR QIRKRVPVDS  240
ESSQSEREPT PDSTDSFPPE TYEPIPKRPR YLQPHREMNL RPLAQLGWKG KEKERDRNYN  300
GNANANVNVN VNASANANSD WGNSVRELTR AILKFGEAYE HAETSKLQQL VEMEKQRMKF  360
AKELELQRMQ FFMKTQLEIS QLKRRRDGGG NTSNNHHHDN NNINNSNNSD SSN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017248670.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-100ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A164X9130.0A0A164X913_DAUCS; Uncharacterized protein
STRINGVIT_09s0002g00720.t011e-128(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103321823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-56sequence-specific DNA binding transcription factors