PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_016000
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 443aa    MW: 48285.2 Da    PI: 8.173
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_016000genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.41.9e-06118141125
                  --S---SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                  +k  lC+++   G C yGd+Ck  H
  DCAR_016000 118 PKKQLCKYWVT-GDCVYGDKCKNLH 141
                  6899******9.*********9555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.5262551IPR000571Zinc finger, CCCH-type
SMARTSM003560.00792750IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.948117144IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5117143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.04E-6117142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5119137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.101.3E-47138433IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003209.1E-4148186IPR001680WD40 repeat
SuperFamilySSF509781.74E-46149436IPR017986WD40-repeat-containing domain
PfamPF004000.0088152186IPR001680WD40 repeat
PROSITE profilePS5029424.732155353IPR017986WD40-repeat-containing domain
PROSITE profilePS5008210.174155195IPR001680WD40 repeat
PROSITE patternPS006780173187IPR019775WD40 repeat, conserved site
PRINTSPR003207.4E-7173187IPR020472G-protein beta WD-40 repeat
SMARTSM00320190226264IPR001680WD40 repeat
SMARTSM003201.3E-6267304IPR001680WD40 repeat
PfamPF004006.9E-4272304IPR001680WD40 repeat
PROSITE profilePS5008213.382274313IPR001680WD40 repeat
PROSITE patternPS006780291305IPR019775WD40 repeat, conserved site
PRINTSPR003207.4E-7291305IPR020472G-protein beta WD-40 repeat
SMARTSM003201.7E-5307344IPR001680WD40 repeat
PfamPF004000.0014309343IPR001680WD40 repeat
PROSITE profilePS500829.907314353IPR001680WD40 repeat
PRINTSPR003207.4E-7331345IPR020472G-protein beta WD-40 repeat
SMARTSM00320270350391IPR001680WD40 repeat
SMARTSM0032056394431IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEIKAATRVP GKSLVFDRVK VGGGAAKNGV CKYWMAGCCS RSDCRFLHPK IQVPGSKKSW  60
KNPNYHVPKT VQMIEQKDVS RRHGSESQVQ SVKKPFLVGQ SAQTSEVKDV TKRPNKEPKK  120
QLCKYWVTGD CVYGDKCKNL HSWYYGDGFT MLAKLEGHTK AVTGITLPSS DKLYSVSKDK  180
SMRVWNCHTG QCCEVVHFND ECGSLMCDGP CIFVGLPNAV KAWNLEFQAE VALNGPVVGQ  240
VYAMEVGNSM FFAGTQDGNI NVWKTGSSEV ATTLKGHTGA VLSLIVGANR LYSGSMDKTI  300
KVWDLDTLKC LQTLHGHSDV VMSLLCWENV LLSGSLDGQI KVWAANESGS LEVVHESDEG  360
HGILGFCGIT DAEAKPILLC SCNDNSVRLY ELPSFTERGR IYAKAEVRTV QIGTGGLFFT  420
GDATGQLTVW KLNEKSSADV SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-241523948323Tako8
6g6n_A3e-241523948323Tako8
6g6n_B3e-241523948323Tako8
6g6n_C3e-241523948323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243634.10.0PREDICTED: zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-141C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A164ZYV40.0A0A164ZYV4_DAUCS; Uncharacterized protein
STRINGXP_008232408.11e-151(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-142zinc finger WD40 repeat protein 1