PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015875
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 343aa    MW: 38911.7 Da    PI: 5.0848
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015875genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013198220123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+k+F++   L  H  +H
  DCAR_015875 198 YRCETCNKVFKSYQALGGHRASH 220
                  9************9999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.17E-8326No hitNo description
PfamPF139121.7E-5327IPR007087Zinc finger, C2H2
SMARTSM003550.18426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286426IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576675.17E-8193220No hitNo description
SMARTSM003550.012198220IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.596198225IPR007087Zinc finger, C2H2
PfamPF139121.0E-11198222IPR007087Zinc finger, C2H2
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
SMARTSM003550.28249271IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058249271IPR007087Zinc finger, C2H2
PfamPF139121.0E-10249271IPR007087Zinc finger, C2H2
PROSITE patternPS000280251271IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
METHKCKLCC RSFDNGRALG GHMRSHMLNL YVPGQHDDYE SIRSYSDEEE EEDKGVLNYE  60
LRENPRKSFR VVDPEFSVVV QDRESESESF KNDDLDRVRR SKRIQSFDHE NLGCESKKSK  120
LSNETNSSGS ETTEEEDIAY CLIMLSRDKW RSPKRINKYV SMDYFDAYND DEDEEDEDED  180
EEEVVKINKS GNKGKGKYRC ETCNKVFKSY QALGGHRASH KKIKATNFEE NEKDNRYNSN  240
ANGAEVKIHE CPVCFRVFAS GQALGGHKRS HGIGLSNGIV AATAKNRTQY ISLEQGPVKE  300
FSKYGGETKI DLNLPAPVCE DEFSSQVEVS AVSDAEFVHP SS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246405.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A165A1L40.0A0A165A1L4_DAUCS; Uncharacterized protein
STRINGVIT_15s0021g02720.t011e-87(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-51C2H2-like zinc finger protein