PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015576
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 423aa    MW: 49386 Da    PI: 8.4158
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015576genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.4e-10334419593
                  -..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  l++s+v k+ + + lp++ +  +++ k + +t++l   + +++++k+  ++ ++++ l+kGW +F   ++LkegD +vF + +r++f  +
  DCAR_015576 334 LKKSHVDKRgHGVFLPRDLLPIYKSWK-SLTTVKLVC-EDEEFQMKV--WRAQNMCRLAKGWTKFTIKKELKEGDKLVFVYRNRRTFDVT 419
                  556666666566777777776565443.334666555.557899999..*******************************9877777544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-7130185IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.924131183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-6131170IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-7200291IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.052202291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-6202292IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.19330419IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-9332420IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-10332420IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-7333420No hitNo description
PfamPF023621.3E-7334419IPR003340B3 DNA binding domain
PROSITE profilePS508638.698387422IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MPCSWKMFYP MILWWNTLKK YHVMFGYTCH QVLYGGGVYS NSHKWIEGLS NFMITYGVRP  60
YYMLSLEYVG GGHFNVKVFS PTAVEINYET KYSDEDLEGM SRGSLIKTDE ILNLGIDDNV  120
KWLEIGFKYF SWLVKLKWKN GYIYFDKEWY KFAKAAELNE GDICSFVRTN YPKRFEICVY  180
TADYLEKCNI KGLGSDTGVM KWFKCLDKKC CLNGQLEIPR LFVEQYANLV NDIVTVVMAD  240
KRTFTLSYYN KLCYLYGVEK IVQTYSLNVN DVMIFSYVAL STFEVSVYKS NGGMDLFFKG  300
RNFHVSNQLS NGADPEEHDE LNTMVNNSNN AIVLKKSHVD KRGHGVFLPR DLLPIYKSWK  360
SLTTVKLVCE DEEFQMKVWR AQNMCRLAKG WTKFTIKKEL KEGDKLVFVY RNRRTFDVTV  420
EE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A162A6W90.0A0A162A6W9_DAUCS; Uncharacterized protein