PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_015564

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 195aa MW: 21102.1 Da PI: 5.601

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015564	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.3	1.1e-42	37	136	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+++ DCAR_015564 37 PCAACKILRRRCAEKCVLAPYFPPTDPLKFTTAHRVFGASNIIKFLQELPEHQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNELQAHLAKAQ 134 7**********************************************************************************************999 PP DUF260 99 ee 100 +e DCAR_015564 135 AE 136 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.011	36	137	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-42	37	134	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDGASKAASI LMPPPKAVAA TPSIAPSSPP VSLVVSPCAA CKILRRRCAE KCVLAPYFPP 60 TDPLKFTTAH RVFGASNIIK FLQELPEHQR ADAVSSMVYE ANARIRDPVY GCAGAICQLQ 120 KQVNELQAHL AKAQAEVVTM QCQYSNLMTL ISMDFDHSPQ SSPDQQSFDN LSTNDISFFD 180 DNNLGSLELD SLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	25	142	2	116	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	25	142	2	116	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245005.1	1e-143	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	5e-74	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A165A827	1e-141	A0A165A827_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400065346	5e-89	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-67	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	DCAR_015564