PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_015294
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 1076aa    MW: 119835 Da    PI: 7.0796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_015294genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00129871010223
                   EET..TTTEEESSHHHHHHHHHHT CS
      zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                   kCp   C+k+F+++ n + H+r+H
  DCAR_015294  987 KCPheGCDKTFNSHKNAVLHLRVH 1010
                   69999*****************99 PP
2zf-C2H211.80.0007610461072123
                   EEET..TTTEEESSHHHHHHHHHH..T CS
      zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                   ykC+   Cg+ F+  s++ rH r+  H
  DCAR_015294 1046 YKCKvkGCGREFRFVSDYSRHRRKtgH 1072
                   99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035534963985IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-49841007IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.22E-59841023No hitNo description
PROSITE profilePS5015710.979861015IPR007087Zinc finger, C2H2
SMARTSM003550.00979861010IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002809881010IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-610081022IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.65310161045IPR007087Zinc finger, C2H2
SMARTSM003550.001210161040IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010181040IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-910231042IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.24E-1010261069No hitNo description
Gene3DG3DSA:3.30.160.602.0E-1110431069IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.4510461075IPR007087Zinc finger, C2H2
SMARTSM003550.2110461072IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010481072IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MPANFWFIIM LYIYTIQNQD TSIKDIISSA CERNVTENKE IVTGGQIDLT KRCVQPSTVE  60
DQVQASTLLV QTPTGAFSSV ERSQSMCCVE EISLSSSIDN FSHGPNTYFR PRIFCLEHAI  120
QVEELLSGKG GADVLVICHS DFKKIRLHAA AVADEIGKPF SYQEVPLDNA SPEDLKLINF  180
AIDDEGQDES KEDWTSTVKI NLRHCLKTFK KYPSEELQHA LTLKGLCFDK AFNGSFPSFK  240
WKSAKLRSKR RKLNQSESKS SESILMKNDE ALESVSDAPF PDKQVKLVHD APLPDKQVKL  300
VSKSSESMLM KNDEALESVS DAPLPDKQVK LVHDAPLPDK QVKIVSKSSE SMLMKNDEAL  360
KSVSDAPLPD KQVKLVQDAP LPVKQVKLVH DAPLPDKQVK LVHNAPLPDK QVKLVHDARL  420
PDKQVKLVHY VRRFKSKNSG SGKTFKILED SQKGLVPVNC ADLDKNKHNG VADNISIYEN  480
TGRGSSERSV LIPGQQSDMQ QKSKCPVERR NVNESPVLSE IKSNLLSAEP VIGNVTSQSG  540
RSKELMMMDE AFGSAIFDSQ MQQEIKLVGN SSEKNGNSSA GSPEVPILST VACQTPDFVQ  600
VERENQMIEG LCSQHVNSNL VNAGKSGVLH KLQGSADAST NEVSDPNISQ VPDTEVERLN  660
EHIEKPLSVV NIGADSRANL YCEVQTQFAS TKVFSDPTIS EGSGSDITKI ERLSEQIEKP  720
IIEVDIGVKS LNLEGEVQPQ FASTKEISVP VLSEPEVSES DISTVERSRE QIEKPLVEKN  780
AGDKNCPSLE FELQPEFASA KGSKEDSVTA FVKITPSTNS SPISVKEIQD VPGEDSAADK  840
MDSLGEITPL QEMKEFDRHN SQVQPDSVVK HNRKRKREKE LLADGFIRSP CERLRPRACS  900
TALAERSVTK EVLEERPVTK KVLKEKPDTK KVFEEKPAAK KIQESSEHPS RCKNGIKKRK  960
ASYNCDVDNC KLSFETKEEL RMHKNNKCPH EGCDKTFNSH KNAVLHLRVH DDARPLKCPW  1020
EGCTKSFKWA WARTEHIRVH TGEKPYKCKV KGCGREFRFV SDYSRHRRKT GHDKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A9e-47961107221132Lysine-specific demethylase REF6
6a58_A9e-47961107221132Lysine-specific demethylase REF6
6a59_A9e-47961107221132Lysine-specific demethylase REF6
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1872878RKRKREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247322.10.0PREDICTED: probable lysine-specific demethylase ELF6
TrEMBLA0A165WB850.0A0A165WB85_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.12e-53C2H2 family protein