PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

DCAR_015107

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 253aa MW: 28843.8 Da PI: 9.6906

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015107	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	94	116	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H DCAR_015107 94 SCSVCSRVYPTSRLLSIHVSEaH 116 6*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	1.6	66	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	68	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	5.4	93	116	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	95	116	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.37	131	156	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	133	156	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MEMEVEKKEI GFKYWFPSRR RFFPDSPFFA SGNVERELLA KQLALDITED EKQELAYIED 60 REKRGVSCPI VGCRVHMNSL EDFEDHYKAR HTASCSVCSR VYPTSRLLSI HVSEAHDSFF 120 QAKVARGHAM YECLVEGCDA KLKSYKSRQQ HLVDKHKFPT SFEFFKKSLP SKKQRQKSHR 180 KQAPKVEAAS SAMQVDEETM SGLVSAVSKL STSDSSPSSI SFGRRHTRGL TFVPRSVQRD 240 KKLDSAPKET PR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	177	KKQRQKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017245900.1	0.0	PREDICTED: zinc finger protein 511
TrEMBL	A0A165WNA0	0.0	A0A165WNA0_DAUCS; Uncharacterized protein
STRING	VIT_14s0068g01930.t01	1e-135	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10211	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14140.1	5e-91	zinc ion binding;nucleic acid binding;zinc ion binding

Link Out ? help Back to Top
Phytozome	DCAR_015107