PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

DCAR_015061

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 171aa MW: 18741.2 Da PI: 7.3613

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_015061	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.4	2.1e-42	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC +C++apyfp e+p+kfa+vhk+FGasnv+kll ++ +++reda++sl+yeA+ar++dPvyG+vg i+ lqqq+ +l++el++++ DCAR_015061 10 PCAACKFLRRKCILGCIFAPYFPPEEPQKFAYVHKIFGASNVSKLLLEILPHQREDAVNSLAYEADARIKDPVYGCVGAISVLQQQVIRLQKELDATN 107 7*********************************************************************************************9987 PP DUF260 99 ee 100 ++ DCAR_015061 108 AS 109 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.521	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-41	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MASPSYTNSP CAACKFLRRK CILGCIFAPY FPPEEPQKFA YVHKIFGASN VSKLLLEILP 60 HQREDAVNSL AYEADARIKD PVYGCVGAIS VLQQQVIRLQ KELDATNASL LRYTSNNDNR 120 ITLHSHSAIL PSRQGTFCFG HNDAGLSLPC NCSYSLNQDS GDANEGERNT *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-60	8	113	9	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-60	8	113	9	114	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017244816.1	1e-125	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_017244817.1	1e-125	PREDICTED: LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	2e-62	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A165WQF9	1e-123	A0A165WQF9_DAUCS; Uncharacterized protein
STRING	XP_010108819.1	7e-70	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	7e-65	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	DCAR_015061

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]