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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_014673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 26934.6 Da PI: 4.9192 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.1 | 7.6e-14 | 54 | 97 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ Lr ++P+ +K++Ka++++ A+ YI++Lq DCAR_014673 54 VAERNRRQKLNDRLYALRAIVPNI-----TKMDKASTVKDAISYIQELQ 97 68*********************7.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 8.24E-18 | 46 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.66 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.05E-13 | 50 | 100 | No hit | No description |
SMART | SM00353 | 8.8E-17 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.2E-17 | 53 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.0E-11 | 54 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MESFDEYKLH WETNSNYNAE ELIRSLLQDD TLLAPGDSIA PDGGQPSAAS RNIVAERNRR 60 QKLNDRLYAL RAIVPNITKM DKASTVKDAI SYIQELQEQE GRIQGEIAQL ESMASEKQDW 120 CKKKRIAHEQ QQLSSYVSGG GGSSSSPPIQ VIDIKVSYVE AKIIVASLIC SKRTDAIIKL 180 CEAFESLKFK IITANITSFS ATLSMTVFIE ADEMEKDTIK IEIETAIRAV NHPGLQSNEL 240 LP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 52 | 116 | 9 | 73 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 50 | 59 | RNIVAERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017245640.1 | 1e-115 | PREDICTED: transcription factor bHLH35-like | ||||
TrEMBL | A0A165XA16 | 1e-178 | A0A165XA16_DAUCS; Uncharacterized protein | ||||
STRING | XP_008223870.1 | 2e-77 | (Prunus mume) | ||||
STRING | VIT_11s0052g00100.t01 | 1e-77 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2923 | 24 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 6e-61 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | DCAR_014673 |