PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014348
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Trihelix
Protein Properties Length: 458aa    MW: 51945.2 Da    PI: 8.9107
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014348genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.71.5e-2838121186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+++e+l+L+++r++m+e++r+++lk+plW+evs+k+ e g++rs+k+Ckek+en+ k+++++keg+++r  ++ ++++y++qle
  DCAR_014348  38 RWPREETLVLLQVRQSMDEAFRDSNLKAPLWDEVSRKLGEYGYTRSAKKCKEKFENIYKYHRRTKEGKSGR--QDGKNYRYYEQLE 121
                  8********************************************************************97..66678******97 PP
2trihelix99.42.9e-31323407186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rW+k ev aLi++r++++ ++ ++ +k+  Weevs++m++ g+ rs+k+Ckekwen+nk+y+++ke++kkr  ++s+tcpyfd+le
  DCAR_014348 323 RWPKAEVEALITVRENLDMQYHDSGSKGSVWEEVSSAMMRLGYDRSSKRCKEKWENINKYYRRVKESNKKR-RQDSKTCPYFDRLE 407
                  8*********************************************************************8.78999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3993195IPR017877Myb-like domain
SMARTSM007171.6E-43597IPR001005SANT/Myb domain
CDDcd122031.92E-2137102No hitNo description
PfamPF138373.0E-1837121No hitNo description
Gene3DG3DSA:1.10.10.603.5E-4315379IPR009057Homeodomain-like
PROSITE profilePS500907.747316380IPR017877Myb-like domain
SMARTSM007170.31320382IPR001005SANT/Myb domain
PfamPF138374.8E-23322409No hitNo description
CDDcd122036.27E-21322387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MFVDNSGGAA AVNLGNDSFA GSDSAGGDEG DRNSAGNRWP REETLVLLQV RQSMDEAFRD  60
SNLKAPLWDE VSRKLGEYGY TRSAKKCKEK FENIYKYHRR TKEGKSGRQD GKNYRYYEQL  120
EIFDNQSSYP INQDKQTYSM EGTMSMPKPT SGSVMMAKPV SQVPHGDTHI SGFELMDTST  180
STTSSSGGGH AKKKRKLMEY FNGLMKQVLE RQENLQKKFI EAIEKLEKDR MSREEEWRAQ  240
QLATKKRQQG ILAHERSASA AKDAALLSFL QKISEQSPPL QLPMNSAPLE KILSMSQPQY  300
NIRESSPVTK SIVHYSPGFP SSRWPKAEVE ALITVRENLD MQYHDSGSKG SVWEEVSSAM  360
MRLGYDRSSK RCKEKWENIN KYYRRVKESN KKRRQDSKTC PYFDRLESLY EKSECATICQ  420
VLNCHEVVGA DDNGFCCGVW VLSQERSNGS QERSNGS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1191196KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017243753.10.0PREDICTED: trihelix transcription factor GT-2-like isoform X1
SwissprotQ391177e-63TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A162AB800.0A0A162AB80_DAUCS; Uncharacterized protein
STRINGevm.model.supercontig_2611.11e-139(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97942328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-100Trihelix family protein