PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_014278
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARF
Protein Properties Length: 520aa    MW: 56744 Da    PI: 4.8465
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_014278genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.72.9e-25107208299
                  EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  +kvltpsd+++ g +++pk++ae+          ++ +  tl+++d  g +We+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+ ++r +++ 
  DCAR_014278 107 VKVLTPSDANNGGGFSVPKSCAETVfppldfaADPPVQ--TLMVKDVLGAVWEFRHIYRGTPRRHLLTTGWSKFVNAKKLVAGDSVVFMQSKR-SQQN 201
                  699*******************999*****96555555..8************************************************6665.5556 PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +v+++r+
  DCAR_014278 202 FVGIRRA 208
                  9999986 PP
2Auxin_resp652.7e-22243322383
   Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  ++a ++  Fe+vY+P+   s++vv++e+ve+a+  v +++G+R+kma+eted s+ ++ +Gtv+ ++++      +S+W++L+
  DCAR_014278 243 EKAVKGLGFEIVYYPKIDVSDYVVQAERVESATFgVDWMIGTRVKMAMETEDLSRMTYiQGTVSKIHQVGG---VQSPWKMLQ 322
                  66777889**********************99877***********************9*********555...89*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-2897213IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.8E-36101216IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-21105207No hitNo description
PROSITE profilePS5086312.351106209IPR003340B3 DNA binding domain
SMARTSM010198.3E-19106209IPR003340B3 DNA binding domain
PfamPF023622.8E-23107208IPR003340B3 DNA binding domain
PfamPF065078.9E-18243322IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MAAQSEFRPV DPTVWRACAG NFVHVPAVGS RAYYFPQGHA NAINTSASLI QSQPFVVCRV  60
LGVDYLADME TDEILAKIQL FPVESESAES TQSESPELTQ PEFASVVKVL TPSDANNGGG  120
FSVPKSCAET VFPPLDFAAD PPVQTLMVKD VLGAVWEFRH IYRGTPRRHL LTTGWSKFVN  180
AKKLVAGDSV VFMQSKRSQQ NFVGIRRAAK AKNVASTSRW NYLDLKEGEE DKSAENAVKQ  240
VMEKAVKGLG FEIVYYPKID VSDYVVQAER VESATFGVDW MIGTRVKMAM ETEDLSRMTY  300
IQGTVSKIHQ VGGVQSPWKM LQVTWDDPEV VKNVMNVSPW QVECVSLLEQ SEVPAAKRSK  360
LSVDAGSPLH REGAVIPGDG EIFEDAGLLP GRDGELFPVT RSSSSVAEPF NADLNPLLMN  420
AGSYPGGIQG ARQDHICVSG ISNFFHENTH QFDITFSVCN RSPVTEAVYT EGDTVSSSSA  480
DPPKEIQFFD NEAVGTQGCS DSPKVGINSF QLFGQIIHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-641035151396Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245681.10.0PREDICTED: auxin response factor 17-like
TrEMBLA0A162ABF00.0A0A162ABF0_DAUCS; Auxin response factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA95601924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-113auxin response factor 17