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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | DBB | ||||||||
Protein Properties | Length: 295aa MW: 32673.6 Da PI: 7.0565 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6.1e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e+ fC ++ lC+ C H+ H+ DCAR_013847 4 QCDVCNKEEAAVFCPADEAALCDACDHRVHHAnklagkHQ 43 7**************************9964446777776 PP | |||||||
2 | zf-B_box | 30.8 | 6.1e-10 | 56 | 92 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 ++C+ ++ek++ lfC++++ lC+dC ++Hk Ht DCAR_013847 56 PICDICQEKRAFLFCQQDRAILCKDCDISIHKAneHT 92 89*****************************878876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.85 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.03E-7 | 3 | 47 | No hit | No description |
SMART | SM00336 | 6.1E-8 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-14 | 53 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.296 | 53 | 100 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.94E-11 | 56 | 100 | No hit | No description |
Pfam | PF00643 | 7.2E-8 | 56 | 92 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MKIQCDVCNK EEAAVFCPAD EAALCDACDH RVHHANKLAG KHQRFSLLQP SSKQFPICDI 60 CQEKRAFLFC QQDRAILCKD CDISIHKANE HTKNHSRFLL TGVKLSATSD IYPSPSSSSV 120 TNKGDTVTSF KKSGNLITKS HPITSPLTDS KASKIANSQP IVNGDGPTSS ISEYLEMLPG 180 WHVEDFLDSS SAINGFSKTS DNDLLPFWDD DVDKNLKYFS SENTGIWVPQ APPPQQQPHF 240 DHSSNMAFGS QICFKDPKDT TTNIRYSKRW IDDGGFTVPQ ISPSISSKRS RTLW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017248385.1 | 0.0 | PREDICTED: B-box zinc finger protein 21-like | ||||
Swissprot | Q9LQZ7 | 9e-93 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A165Y386 | 0.0 | A0A165Y386_DAUCS; Uncharacterized protein | ||||
STRING | XP_009780919.1 | 1e-116 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1463 | 23 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 1e-92 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013847 |