PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013757
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 534aa    MW: 57401.8 Da    PI: 7.7013
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013757genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79e-053050323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C+ C+k F +   L  H+r+H
  DCAR_013757 30 CSVCNKEFVSAKALSGHMRVH 50
                 *******************99 PP
2zf-C2H2120.0006291111121
                  EEETTTTEEESSHHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                  ++C +C+k+F++  +L  H+r
  DCAR_013757  91 HPCDHCSKVFRTAVSLFGHMR 111
                  78******************8 PP
3zf-C2H2157.3e-05346368123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+Fs++  L  H ++H
  DCAR_013757 346 YKCSTCDKCFSSPQALGGHRSSH 368
                  9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.1E-62850IPR007087Zinc finger, C2H2
SMARTSM003550.00552850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.3052855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
PfamPF139122.9E-891115IPR007087Zinc finger, C2H2
PROSITE profilePS501579.78591113IPR007087Zinc finger, C2H2
SMARTSM003550.01291113IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.66E-991113No hitNo description
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SuperFamilySSF576672.66E-9341368No hitNo description
PfamPF139122.5E-7346370IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.575346373IPR007087Zinc finger, C2H2
SMARTSM003550.024346368IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
SuperFamilySSF576677.09E-5448473No hitNo description
PfamPF139121.0E-12449474IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66450472IPR007087Zinc finger, C2H2
SMARTSM003550.3450472IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280452472IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MPQMNSSAAD QQAGGSSSSP GDVNLSKTNC SVCNKEFVSA KALSGHMRVH GSATKKQQGL  60
EDVIRARNQP ILKKQRNRSR SDSQSLLPTL HPCDHCSKVF RTAVSLFGHM RCHPERAWRG  120
MRPPSQELPT WRVKARRGRR SLKNQAEEVS WSYVDLDSDE DEVDDEERRR TLDGVNDLLL  180
LKNSGSSGSS GLSTLAAAAK GNSYREEGFD EMRSVGNGFG EQVGKKRRGN VDDYPVVSKM  240
TREVGGSSAD HKMRDCIGFV HQEGNAVGNN SDAEDGSDGI NTELVIGNKT RDKDNHGDLA  300
IGNGKSKGTR KVRLIKELMI TQEKPPAVGG SGSSAQAAAA IASEKYKCST CDKCFSSPQA  360
LGGHRSSHYK LKVTVINGTD SVPDKHPIQI SSSVSAFAPP AQTLVSNEEL NKSHQQQPLK  420
SEECATKGNY FDEVGGSSKA DPDHFSSTVY QCTMCYKEFP SGQALGGHKR CHWAALADGQ  480
TEAEVPPLVQ AGTSGEEAGT QAGGKRIRLM GVDLDVPPSL VPDAEDLVAA GWY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017245744.10.0PREDICTED: uncharacterized protein LOC108217423
TrEMBLA0A165Y8D00.0A0A165Y8D0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-15C2H2 family protein