PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | DCAR_013728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
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Family | MYB | ||||||||
Protein Properties | Length: 361aa MW: 40505.1 Da PI: 5.0903 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.7 | 7.4e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed +l+ +++ G g+W++ ++ g+ R++k+c++rw +yl DCAR_013728 16 RGPWSPAEDMKLAAFIQKNGHGNWRSLPKLAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51.3 | 2.7e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E+e +++++ ++G++ W++Ia++++ gRt++++k+ w+++l DCAR_013728 69 RGNFTLQEEETIIKLHDLYGNR-WSKIAAELP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.769 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.7E-29 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.988 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.6E-26 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.51E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MGGGRAPCCD KKNVKRGPWS PAEDMKLAAF IQKNGHGNWR SLPKLAGLLR CGKSCRLRWI 60 NYLSPSVKRG NFTLQEEETI IKLHDLYGNR WSKIAAELPG RTDNEIKNVW NTHLKKRLSG 120 KYSQCRSNIS KNKLPKNDEC SSIMIAALSS VSSTSATSNT GAEVPCQEDN KQPTRDHRRD 180 QCPPVATMPE MLTEITPQIC PDNNAKKETS RTSSFSSNAS DYSSSAQPYH QAGNADKEME 240 SLLSYSEEVP SDFDIWTVLE DFEKFESQQE QQLVPSYLQG SSSGDEDYII NHDIELAEKS 300 EWYRYLENNE IGLVGIIGEE ENISQNGKTG NGFCEEMSLE PEIDPDMDCL KHWPPSPHIF 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-23 | 16 | 118 | 7 | 108 | B-MYB |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017246113.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A162ACQ3 | 0.0 | A0A162ACQ3_DAUCS; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 5e-68 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | DCAR_013728 |