PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_013644

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 280aa MW: 31320.7 Da PI: 7.8326

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_013644	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.6e-10	62	92	5	35
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekv 35 k rr+++NReAAr+sR+RKka++++Le DCAR_013644 62 KTLRRLAQNREAARKSRLRKKAYVQQLESSR 92 7889***********************9854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-6	58	121	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.036	60	104	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.77E-7	62	100	No hit	No description
Pfam	PF00170	7.3E-8	62	96	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.5E-8	63	104	No hit	No description
PROSITE pattern	PS00036	0	65	80	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MLASQHENWG ESNMPDRSPR TDTSTDVDPE DKNQRFDRDQ SGAVVMFSDS SDRSKEKSLD 60 QKTLRRLAQN REAARKSRLR KKAYVQQLES SRLKLTQLEQ EVQQARPQGG STSTAGDQSH 120 ATGALAFDVE YARWLEEQNR QINELRAALL TNQLEPLTEQ QLAGIYNLQQ SSQQAEDALS 180 QGMEALQQSL SETLANGSSS TSGSSGNVAN YMGQMAMAMG KLGTLESFLR QADNLRQQTL 240 QQMHRILTTR QSARALLAIH DYFSRLRALS SLWVARPRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012068691.1	1e-143	transcription factor TGA6 isoform X2
Swissprot	Q41558	4e-90	HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBL	A0A165YD79	0.0	A0A165YD79_DAUCS; Uncharacterized protein
STRING	Gorai.011G217200.1	1e-112	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16459	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06960.2	5e-86	OCS-element binding factor 5

Link Out ? help Back to Top
Phytozome	DCAR_013644