PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013444
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 301aa    MW: 32915.7 Da    PI: 9.174
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013444genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.12.3e-31136192158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p++VNaKQy++Il+RR++Rak+e e+kl +ksrkpylh SRh hA+rRpRg+gGrF
  DCAR_013444 136 DGPIFVNAKQYHGILRRRKSRAKAELEHKL-TKSRKPYLHRSRHLHAMRRPRGCGGRF 192
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.1E-34134195IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.02135195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.8E-23138160IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27138192IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860140160IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.8E-23169192IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MTMHSVYYKE DDEGAAAYSP IGHLSSASVP WWTQLPSAQS ACPSKSSVDH SSTEDQFTHD  60
AGDCKSLKDG GKPIQSGAAF ATQATPREYG SSFELGFGKP VSSANPYGDH CYGAFSTYLP  120
QFTGRVMLPL NLASDDGPIF VNAKQYHGIL RRRKSRAKAE LEHKLTKSRK PYLHRSRHLH  180
AMRRPRGCGG RFLNTKKRDD GKGTNSNGGR QLFQPTGSQN SEVLQSDSSN LTSPREVNYC  240
RQNLSGSEAT SMFSMADLNH FPMSNVRTSG VSLADMMTGH SVFTHSKWFA EADSCCNLKV  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-18138199465NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2912410.0AB291241.1 Daucus carota C-HAP2A mRNA for HAP2 subunit, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017246854.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_017246855.10.0PREDICTED: nuclear transcription factor Y subunit A-10
RefseqXP_017246856.10.0PREDICTED: nuclear transcription factor Y subunit A-10
TrEMBLA0A165YSL10.0A0A165YSL1_DAUCS; Uncharacterized protein
STRINGVIT_08s0032g01190.t018e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.27e-49nuclear factor Y, subunit A10