PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_013443
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family TALE
Protein Properties Length: 694aa    MW: 76064.4 Da    PI: 7.0766
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_013443genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-094004371954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  DCAR_013443 400 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 437
                  554459******************************88 PP
2BELL114.46e-37264335172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  erqe+q+kkakL+++l+eV++rY+qy+ q+q vis Fe+ +g+gsakpYt+lAl++iS++FrcLkdai++qi
  DCAR_013443 264 ERQEVQMKKAKLVNMLDEVEHRYRQYHTQMQLVISWFEQSTGVGSAKPYTALALQTISKQFRCLKDAIMGQI 335
                  79********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.8E-54189333IPR006563POX domain
PfamPF075266.2E-45194332IPR006563POX domain
PROSITE profilePS5007112.195378441IPR001356Homeobox domain
CDDcd000864.77E-12381442No hitNo description
SMARTSM003895.3E-9381445IPR001356Homeobox domain
SuperFamilySSF466896.84E-17382448IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-29384448IPR009057Homeodomain-like
PfamPF059202.9E-18398437IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MGTYFHGNSE IQGDGSQTLV LMNPGYNHNL GGYSDTNHQP PPLSNFFFLN NAHSSATTNI  60
VQAPSTDQST QHFVGIPLSA SQDDHPHRVS IAHSQQHEIS SLHSFAPPMH HYSLYNQLDL  120
TAAREATPSN QQQQQGLSLS LSSQHPGYGP FRTEDNELPS PAPAPPSAIS PKSNDVQVAQ  180
ASSSVVSLNG VQSVLLNSKY LKVAQELLYE VANVGKGLQN IDQFGKSSNG NTKSVTGGSA  240
GGDGLRGELG QTSSKRSVEL TTVERQEVQM KKAKLVNMLD EVEHRYRQYH TQMQLVISWF  300
EQSTGVGSAK PYTALALQTI SKQFRCLKDA IMGQIHAASK SLGEEDSQGG KMDGSRLKFI  360
DNQLRQQKAL QQLGMIQHNA WRPQRGLPER SVSVLRAWLF EHFLHPYPKD SDKHMLAKQT  420
GLTRSQVSNW FINARVRLWK PMVEEMYMEE IKENQNNGSE GETRKNEPGE KMASKARAPS  480
TNSPENYDTT TSQNTRALIS ASTASTSPNG LSIRNQSGFS LTGSSEMEEM TRGSPKKQRG  540
TGTIHSLGNV SLRNMEFKPE ANNEQMSMKF HNDQRQSRDG FTLMGSPTNY IQGFGSYSIG  600
DIGRFGAEPF SAPYSANGVS LTLGLPHGEN LSMSGTNQDF LPEQNIQIGR GLEEGEFGAV  660
DTPTSSHSAN IYDSMDIQSR KRLAAQLLPD FVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16387445563Homeobox protein Meis2
3k2a_B5e-16387445563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017247149.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017247150.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017247151.10.0PREDICTED: BEL1-like homeodomain protein 1
RefseqXP_017247152.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A165YSM00.0A0A165YSM0_DAUCS; Uncharacterized protein
STRINGXP_009628712.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-131BEL1-like homeodomain 1