PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_012917
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 343aa    MW: 36964.1 Da    PI: 8.1452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_012917genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.21e-114570126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C +++rtG C yG+ C+F+H+
  DCAR_012917 45 PGEPDCIYYLRTGMCGYGADCRFNHP 70
                 5789*********************8 PP
2zf-CCCH37.44.1e-1290114327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tGtCkyG++Ck++H++
  DCAR_012917  90 QPDCGYFLKTGTCKYGASCKYHHPR 114
                  789********************96 PP
3zf-CCCH32.51.4e-10135159327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  + +C++++r+G Ck+G  CkF+H++
  DCAR_012917 135 ENPCPYYMRNGACKFGIGCKFHHPQ 159
                  679********************97 PP
4zf-CCCH39.21.1e-12251276227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+f+ tG CkyG+ Ck++H++
  DCAR_012917 251 DQPECRYFMNTGSCKYGSDCKYNHPR 276
                  689*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6574472IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-54471IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-54971IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-45069IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.84987115IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-990114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-691116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-493114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6131161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615132160IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-8134159IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4137159IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5249276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483249277IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10251276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7252279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6255277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPDNRQVKRN VEGLRRLRIQ PDEKDDGGGG GGGGGNDTSM YPDRPGEPDC IYYLRTGMCG  60
YGADCRFNHP SNLGLQIGQY GTELPQRVGQ PDCGYFLKTG TCKYGASCKY HHPRDRHGAG  120
PLVLNTLGLP MRQDENPCPY YMRNGACKFG IGCKFHHPQP DSAVPTGPAV YGSTASWSSP  180
KSTYISAPRS GSQTYMPVIY PPSQSMASAP EWNTYMSNLS PAPSNFYGES GFRGAVPLSS  240
AGVSSLPERP DQPECRYFMN TGSCKYGSDC KYNHPREKIA QLTASSLGPL GLPLRPSPKH  300
PDWSGKQEAA NNNNSNANTR EDSPEKAGSP SAKAEVPEAP LN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017244366.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
TrEMBLA0A165Z7X90.0A0A165Z7X9_DAUCS; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-122(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-86C3H family protein