PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_012848

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 364aa MW: 41274.9 Da PI: 7.5317

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_012848	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.9	7.1e-11	77	110	5	38
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 k +rr+++NReAAr+sR+RKka++++Le+ +L DCAR_012848 77 KLQRRLAQNREAARKSRLRKKAYVQQLETSRLKL 110 89**************************865554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.8E-7	73	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.14	75	117	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.21E-6	77	117	No hit	No description
Pfam	PF00170	8.7E-8	77	117	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-7	77	121	No hit	No description
PROSITE pattern	PS00036	0	80	95	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-27	167	240	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MASPSTQFAT ARRMGIYDTL HQISMWEDVL GGGVSPETCT SPNMKEDARL INKTEYTSQE 60 SLGPSSDNQA AKILSEKLQR RLAQNREAAR KSRLRKKAYV QQLETSRLKL AQLEQDLDRT 120 RQQGVYTGGA LNMGNAGFSS TMNSDAGLIT FGMEYELWLE EQEKMNCELK NMLQAHISDA 180 QLRMFVESGL NHYADLFRMK ADAARCNVFY LMSGMWRTTV ERIFLWIGGF RPSEILKIIR 240 PQLEPLTEQQ LASVSSLRHS CQQAEDALSQ GMEKLQQTLT QCVTDSSSGL SNYNCQMVTA 300 MERLDSLESF MIQADHLRQQ TLQQMFHILT VRQAARGLVA FGEYFQRLRA ISSLWDARSH 360 QHT*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MASPSTQFAT ARRMGIYDTL HQISMWEDVL GGGVSPETCT SPNMKEDARL INKTEYTSQE  60
SLGPSSDNQA AKILSEKLQR RLAQNREAAR KSRLRKKAYV QQLETSRLKL AQLEQDLDRT  120
RQQGVYTGGA LNMGNAGFSS TMNSDAGLIT FGMEYELWLE EQEKMNCELK NMLQAHISDA  180
QLRMFVESGL NHYADLFRMK ADAARCNVFY LMSGMWRTTV ERIFLWIGGF RPSEILKIIR  240
PQLEPLTEQQ LASVSSLRHS CQQAEDALSQ GMEKLQQTLT QCVTDSSSGL SNYNCQMVTA  300
MERLDSLESF MIQADHLRQQ TLQQMFHILT VRQAARGLVA FGEYFQRLRA ISSLWDARSH  360
QHT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017248522.1	0.0	PREDICTED: transcription factor TGA1-like isoform X2
Refseq	XP_017248524.1	0.0	PREDICTED: transcription factor TGA1-like isoform X2
Swissprot	Q39237	1e-140	TGA1_ARATH; Transcription factor TGA1
TrEMBL	A0A162AES9	0.0	A0A162AES9_DAUCS; Uncharacterized protein
STRING	VIT_18s0001g04470.t01	1e-168	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65210.5	1e-142	bZIP family protein

Link Out ? help Back to Top
Phytozome	DCAR_012848

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Herrera-Vásquez A, et al. Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis. Plant Mol. Biol. Rep., 2018. [PMID:26696694] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Sun T, et al. TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g). New Phytol., 2018. 217(1): p. 344-354 [PMID:28898429]